View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12794_high_11 (Length: 242)
Name: NF12794_high_11
Description: NF12794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12794_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 25955006 - 25955236
Alignment:
| Q |
1 |
gccaaccgttctgaaacagattgtaagcctttgtccaacgattcttcgtctccttcataatcatcatctccttcaaagattaaatgaactccacattttt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25955006 |
gccaacctttctgaaacagattgtaagcctttgtccaacgattcttcgtctccttcataatcatcatctccttcaaagattaaatgaactccacattttt |
25955105 |
T |
|
| Q |
101 |
tcaactccaacctctcatcaaaaggaggatttctctttgccacgcaaactgtatcagaatcttttaaagcggataccaatggatggtaattattgcacct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25955106 |
tcaactccaacctctcatcaaaaggaggatttctctttgccacacaaactgtatcagaatcttttaaagcggataccaatggatggtaattattgcacct |
25955205 |
T |
|
| Q |
201 |
tcgcaagtatatatgttgatcatctgtcctt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25955206 |
tcgcaagtatatatgttgatcatctgtcctt |
25955236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 25945912 - 25946102
Alignment:
| Q |
1 |
gccaaccgttctgaaacagattgtaagcctttgtccaacgattcttcgtctccttcataatcatcatctccttcaaagattaaatgaactccacattttt |
100 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||| ||||| | |
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| T |
25945912 |
gccaacctttctgaaacagattgtaaacctttgtccaacgattcttcatctccatcataatcatcatccccttcaaagattaaataaactccgcatttct |
25946011 |
T |
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| Q |
101 |
tcaactccaacctctcatcaaaaggaggatttctctttgccacgcaaactgtatcagaatcttttaaagcggataccaatggatggtaatt |
191 |
Q |
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||||| ||| | | ||||||||||||| ||||| | | ||| |||| |||||||| |||||||||| || ||| ||| |||||||||| |
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| T |
25946012 |
tcaacctcaatcctttatcaaaaggaggacttctcgtagtcacacaaaatgtatcagcatcttttaaaaaggctactaattgatggtaatt |
25946102 |
T |
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