View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12794_high_15 (Length: 204)
Name: NF12794_high_15
Description: NF12794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12794_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 11093667 - 11093476
Alignment:
| Q |
1 |
tacacgtgaaacttgaaagaaatcttgcatatagataaataaactttgtcttagaacttggcatttactaatagtaaatannnnnnnnnnnnnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11093667 |
tacacgtgaaacttgaaagaaatcttgcatatagataaataaactttgtcttagaacttggcatttactaatagtaaatatttttctgatttttgttttt |
11093568 |
T |
|
| Q |
101 |
gtcaatagaattaataaatactaaatattagagcagtggctatgacatctaagagtgnnnnnnntactcaaaagattccatgtaccattcat |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11093567 |
gtcaatagaattaataaatactaaatattagagcagtggctatgacatctaagagtgaaaaaaatactcaaaagattccatgtaccattcat |
11093476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University