View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12794_low_10 (Length: 246)
Name: NF12794_low_10
Description: NF12794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12794_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14181708 - 14181946
Alignment:
| Q |
1 |
catgaagcacaatcaaaagaaatatgcctccaaaagcaacaactctcaacattactctttctggtggtgactttgcaatcaaataaacacaatccaaact |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14181708 |
catgaagcacaatcaaaagaaatatgcatccaaaagcaacaactctcaacattactctttctggtggtgactttgcaatcaaataaacacaatccaaact |
14181807 |
T |
|
| Q |
101 |
tatcaaaatccaactaaacctttccatcaacactttaatcatggacacaaatttccccacattttctccaaagattttacatataatcctcaaacaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14181808 |
tatcaaaatccaactaaacctttccatcaacactttaatcatggacacaaatttccccacattttctccaaagattgtacatataatcctcaaacaaaga |
14181907 |
T |
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| Q |
201 |
acactaacaacaaaaaatgttgtcattgaccaacctttg |
239 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
14181908 |
acactaccaacaaaaaatgttgtcattgaccaacctttg |
14181946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14194867 - 14195105
Alignment:
| Q |
1 |
catgaagcacaatcaaaagaaatatgcctccaaaagcaacaactctcaacattactctttctggtggtgactttgcaatcaaataaacacaatccaaact |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14194867 |
catgaagcaaaatcaaaagaaatatgcctccaaaagcaacaactctcaacattactttttctggtggtgactttgcaatcaaataaacacaatccaaact |
14194966 |
T |
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| Q |
101 |
tatcaaaatccaactaaacctttccatcaacactttaatcatggacacaaatttccccacattttctccaaagattttacatataatcctcaaacaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14194967 |
tatcaaaatccaactaaacctttccatcaacactttaatcatggacacaaatttccccacattttcaccaaagattttacatataatcctcaaacaaaga |
14195066 |
T |
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| Q |
201 |
acactaacaacaaaaaatgttgtcattgaccaacctttg |
239 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
14195067 |
acactaacaacaaaaaatgttgtcattgaccagcctttg |
14195105 |
T |
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