View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12794_low_13 (Length: 221)
Name: NF12794_low_13
Description: NF12794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12794_low_13 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 22526372 - 22526450
Alignment:
| Q |
143 |
gagcattacagttgaagagaatggctaaaaattcaaaggaaagcaataaaaactgaaattcctaaatcttaaactcagc |
221 |
Q |
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| T |
22526372 |
gagcattacagttgaagagaatggctaaaaattcaaagggaagcaataaaaactgaaattcctaaatcttaaactcagc |
22526450 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22525259 - 22525324
Alignment:
| Q |
1 |
gataaaaacaaagtaagcccttcaagacacaaacatgttctggtactggtgtaattgacaacttct |
66 |
Q |
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| T |
22525259 |
gataaaaacaaaggaagcccttcaagacacaaacatgttctggtactggtacaattgacagcttct |
22525324 |
T |
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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 22533635 - 22533584
Alignment:
| Q |
72 |
aaagatttatcatttatattacgattttaatataaaaagtcaaacgaacatt |
123 |
Q |
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| T |
22533635 |
aaagatttatcgtttgtattacgattttaatacaaaaagtcaaacgaacatt |
22533584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22534606 - 22534561
Alignment:
| Q |
1 |
gataaaaacaaagtaagcccttcaagacacaaacatgttctggtac |
46 |
Q |
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| T |
22534606 |
gataaaaacaaaggacgcccttcaggacacaaacatgttccggtac |
22534561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 19754273 - 19754314
Alignment:
| Q |
152 |
agttgaagagaatggct-aaaaattcaaaggaaagcaataaa |
192 |
Q |
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| T |
19754273 |
agttgaagagaatggcttaaaaattcagaggaaagcaataaa |
19754314 |
T |
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