View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12794_low_2 (Length: 436)

Name: NF12794_low_2
Description: NF12794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12794_low_2
NF12794_low_2
[»] chr4 (4 HSPs)
chr4 (32-431)||(43992624-43993020)
chr4 (259-333)||(19319284-19319356)
chr4 (364-417)||(19319231-19319284)
chr4 (252-346)||(12617193-12617287)
[»] chr2 (4 HSPs)
chr2 (120-417)||(33032798-33033106)
chr2 (120-165)||(19060543-19060588)
chr2 (263-304)||(20467734-20467775)
chr2 (263-304)||(27068920-27068961)
[»] chr8 (1 HSPs)
chr8 (281-431)||(18477947-18478097)
[»] chr7 (2 HSPs)
chr7 (254-423)||(21114954-21115123)
chr7 (122-170)||(21114812-21114860)
[»] chr6 (1 HSPs)
chr6 (250-307)||(19496936-19496993)
[»] chr5 (1 HSPs)
chr5 (263-304)||(42761838-42761879)
[»] chr3 (2 HSPs)
chr3 (263-304)||(2436162-2436203)
chr3 (253-305)||(14509706-14509758)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 32 - 431
Target Start/End: Complemental strand, 43993020 - 43992624
Alignment:
Q  32 tgtgtatcacacgtattacaacataaaatctattatcctaacacaaaaacataaagtccattaagaaatgaagaaaattaacataaaatctatctaataa 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43993020 tgtgtatcacacgtattacaacataaaatctattatcctaacacaaaaacataaagtccattaagaaattaagaaaattaacataaaatctatctaataa 43992921  T
Q  132 catttatttaccttggtgtatattaggtgacttcaatgatattctggatgtcaaagaaaaaagaggtggttcttctgtacggactcgttggttaatcaat 231  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  43992920 catttctctaccttggtgtatattaggtgacttcaatgatattctggatgtcaaagaaaaaagaggtggttct---gtacggactcgttggttaatcaat 43992824  T
Q  232 gggttccgacatgctcgttagttgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtactccaagggcagttgaggaacggttgga 331  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  43992823 gggttccgacatgctcgttggttgatgtttttatggaaggttatcccttcatatggtttaaaagtttaggtactccaagggcagttgaggaacgattgga 43992724  T
Q  332 ttgtgcacttgctaacgcatcatggtttcagctatttcctaatgcgaaggtggaaaatttagtagccccgacttctgatcattatccgattcatctcact 431  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||||    
T  43992723 ttgtgcacttgctaacgcatcctggtttcagctatttcctaatgcgaaggtggaaaatttagtagccccggcttctaatcattatccgactcttctcact 43992624  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 19319356 - 19319284
Alignment:
Q  259 tttttatggaaggttatcccttcacatggtttaaaagtttaggtactccaagggcagttgaggaacggttggatt 333  Q
    |||||||||||||||||| ||||||||||||||||||||||||  | ||||| ||| ||||||||||||||||||    
T  19319356 tttttatggaaggttatcacttcacatggtttaaaagtttagg--ccccaagagcaattgaggaacggttggatt 19319284  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 19319284 - 19319231
Alignment:
Q  364 tatttcctaatgcgaaggtggaaaatttagtagccccgacttctgatcattatc 417  Q
    ||||||| ||||||||||||||||||||||||| ||| || |||||||||||||    
T  19319284 tatttccaaatgcgaaggtggaaaatttagtagtcccaacctctgatcattatc 19319231  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 12617287 - 12617193
Alignment:
Q  252 gttgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtactccaagggcagttgaggaacggttggattgtgcacttgctaa 346  Q
    |||||||| |||| |||||| || | ||||||  | ||||||||| | ||||| || || |||||||| ||| ||||||||||||| ||||||||    
T  12617287 gttgatgtctttaaggaaggatacctcttcactcgatttaaaagtctgggtacgccgagagcagttgaagaaaggttggattgtgctcttgctaa 12617193  T

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Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 120 - 417
Target Start/End: Complemental strand, 33033106 - 33032798
Alignment:
Q  120 tctatctaataacatttatttaccttggtgtatattaggtgacttcaatgatattctggatgtcaaagaaaaaagaggtggttcttctgtacggactcgt 219  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||   |||||| |||||    
T  33033106 tctatctaatgacatttctttaccttggtgtatattaggtgacttcaatgatattctggatgtcgaagaaaagagaggtggttct---gtacgggctcgt 33033010  T
Q  220 tggttaatcaatgggttccgacatgctcg-------------ttagttgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtactc 306  Q
    |||||||||||||||||||||||||||               || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33033009 tggttaatcaatgggttccgacatgctgcatctgatgcaagtttggttgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtactc 33032910  T
Q  307 caa-gggcagttgaggaacggttggattgtgcacttgctaacgcatcatggtttcagctatttcctaatgcgaaggtggaaaatttagtagccccgactt 405  Q
    ||| ||||||||||||||||||||||| |||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33032909 caatgggcagttgaggaacggttggatcgtgcacttactaatgcatcctggtttcagttatttcctaatgcgaaggtggaaaatttagtagccccgactt 33032810  T
Q  406 ctgatcattatc 417  Q
    ||||||| ||||    
T  33032809 ctgatcactatc 33032798  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 19060588 - 19060543
Alignment:
Q  120 tctatctaataacatttatttaccttggtgtatattaggtgacttc 165  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  19060588 tctatctaataacatttctttaccttggtgtatattaggagacttc 19060543  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 20467734 - 20467775
Alignment:
Q  263 tatggaaggttatcccttcacatggtttaaaagtttaggtac 304  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  20467734 tatggaaggttatccgttcacatggtttaaaagtttgggtac 20467775  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 27068920 - 27068961
Alignment:
Q  263 tatggaaggttatcccttcacatggtttaaaagtttaggtac 304  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  27068920 tatggaaggttatccgttcacctggtttaaaagtttgggtac 27068961  T

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Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 281 - 431
Target Start/End: Original strand, 18477947 - 18478097
Alignment:
Q  281 cacatggtttaaaagtttaggtactccaagggcagttgaggaacggttggattgtgcacttgctaacgcatcatggtttcagctatttcctaatgcgaag 380  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||||||||| |||||||||||||||||    
T  18477947 cacatggtttaaaattttaggtactccaagggcagttgaggaacggttggatcatgcacttgctaacacatcctggtttcagttatttcctaatgcgaag 18478046  T
Q  381 gtggaaaatttagtagccccgacttctgatcattatccgattcatctcact 431  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  18478047 gtggaaaatttagtagccccggcttctgatcattatccgattcttctcact 18478097  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 423
Target Start/End: Original strand, 21114954 - 21115123
Alignment:
Q  254 tgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtactccaagggcagttgaggaacggttggattgtgcacttgctaacgcatca 353  Q
    |||| ||||||||||||| ||||  || || ||||| ||||| |||||||| ||||||||||||||||||||||| ||  |||  || ||||| ||| ||    
T  21114954 tgatatttttatggaaggatatctgtttacttggttcaaaagcttaggtacaccaagggcagttgaggaacggttagaccgtggtctcgctaatgcaaca 21115053  T
Q  354 tggtttcagctatttcctaatgcgaaggtggaaaatttagtagccccgacttctgatcattatccgattc 423  Q
    |||||| |  ||||||| |||||||||||||| ||  |||| || ||| ||||||| |||||||||||||    
T  21115054 tggtttgatttatttccaaatgcgaaggtggagaacctagtcgctccggcttctgaccattatccgattc 21115123  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 21114812 - 21114860
Alignment:
Q  122 tatctaataacatttatttaccttggtgtatattaggtgacttcaatga 170  Q
    |||||||||| |||| | | |||||||||||||||||||||||||||||    
T  21114812 tatctaataatatttctctgccttggtgtatattaggtgacttcaatga 21114860  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 19496936 - 19496993
Alignment:
Q  250 tagttgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtactcc 307  Q
    |||| ||||||  ||||||||||||||| ||||| ||||| |||||||| ||||||||    
T  19496936 tagtagatgttcatatggaaggttatccgttcacctggttcaaaagtttgggtactcc 19496993  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 42761838 - 42761879
Alignment:
Q  263 tatggaaggttatcccttcacatggtttaaaagtttaggtac 304  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  42761838 tatggaaggttatccgttcacctggtttaaaagtttgggtac 42761879  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 2436162 - 2436203
Alignment:
Q  263 tatggaaggttatcccttcacatggtttaaaagtttaggtac 304  Q
    ||||||||||||||| |||||||||||||| ||||| |||||    
T  2436162 tatggaaggttatcctttcacatggtttaagagtttgggtac 2436203  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 14509758 - 14509706
Alignment:
Q  253 ttgatgtttttatggaaggttatcccttcacatggtttaaaagtttaggtact 305  Q
    ||||||||  ||||||||||||||  ||||| |||||||||||||| ||||||    
T  14509758 ttgatgttcatatggaaggttatctgttcacttggtttaaaagtttgggtact 14509706  T

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