View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12794_low_3 (Length: 336)

Name: NF12794_low_3
Description: NF12794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12794_low_3
NF12794_low_3
[»] chr3 (3 HSPs)
chr3 (147-323)||(55078352-55078528)
chr3 (18-101)||(55078574-55078657)
chr3 (151-230)||(27263270-27263349)
[»] chr1 (1 HSPs)
chr1 (19-87)||(7204568-7204636)
[»] chr6 (1 HSPs)
chr6 (19-62)||(361036-361079)
[»] chr7 (1 HSPs)
chr7 (19-67)||(40677038-40677086)
[»] chr5 (2 HSPs)
chr5 (19-76)||(22792170-22792227)
chr5 (155-215)||(17815554-17815614)
[»] chr4 (2 HSPs)
chr4 (19-64)||(19392196-19392241)
chr4 (147-199)||(42739657-42739709)
[»] chr2 (4 HSPs)
chr2 (147-200)||(13173420-13173473)
chr2 (147-215)||(26780798-26780871)
chr2 (19-87)||(22999075-22999143)
chr2 (147-215)||(31920785-31920853)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 147 - 323
Target Start/End: Complemental strand, 55078528 - 55078352
Alignment:
Q  147 cccctccccttgtgaaccaaacatatttacaattaaagtccctcccttcccctcttttgaaccgaacatctatgtaatcaaaattcattccctcccttcc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55078528 cccctccccttgtgaaccaaacatatttacaattaaagtcccttccttcccctcttttgaaccgaacatctatgtaatcaaaattcattccctcccttcc 55078429  T
Q  247 ccttcgttgagccaaacaagcccttcggttctatctccttgtttgagaatgaattgtttcatcaaaagatttcttct 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55078428 ccttcgttgagccaaacaagcccttcggttctatctccttgtttgagaatgaattgtttcatcaaaagatttcttct 55078352  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 55078657 - 55078574
Alignment:
Q  18 cttcgaacccctgtcacgatgttcggcctagcaattttggcatttttgcctgttgagctgggaattatggactgttatgtattc 101  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55078657 cttcgaacccctgtcacgacgttcggcctagcaattttggcatttttgcctgttgagctgggaattatggactgttatgtattc 55078574  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 27263349 - 27263270
Alignment:
Q  151 tccccttgtgaaccaaacatatttacaattaaagtccctcccttcccctcttttgaaccgaacatctatgtaatcaaaat 230  Q
    |||||||||||||| || ||||||  ||||||| ||| |||  |||||||||||||||| ||||| ||| |||| |||||    
T  27263349 tccccttgtgaacccaaaatatttttaattaaaatccatcctctcccctcttttgaaccaaacatgtatttaattaaaat 27263270  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 7204568 - 7204636
Alignment:
Q  19 ttcgaacccctgtcacgatgttcggcctagcaattttggcatttttgcctgttgagctgggaattatgg 87  Q
    |||||||||| |||| ||||||||||||| |||||| |||||||||||| |||||||| ||| ||||||    
T  7204568 ttcgaaccccggtcatgatgttcggcctaacaatttcggcatttttgccagttgagctaggacttatgg 7204636  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 361079 - 361036
Alignment:
Q  19 ttcgaacccctgtcacgatgttcggcctagcaattttggcattt 62  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  361079 ttcgaacccgtgtcacgatgttcggccttgcaattttggcattt 361036  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 40677086 - 40677038
Alignment:
Q  19 ttcgaacccctgtcacgatgttcggcctagcaattttggcatttttgcc 67  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||||||    
T  40677086 ttcgaaccccggtcatggtgttcggcctaacaattttggcatttttgcc 40677038  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 22792170 - 22792227
Alignment:
Q  19 ttcgaacccctgtcacgatgttcggcctagcaattttggcatttttgcctgttgagct 76  Q
    ||||||||||||||| || || || |||| |||||| |||||||||||| ||||||||    
T  22792170 ttcgaacccctgtcaagacgtccgacctaacaatttcggcatttttgccagttgagct 22792227  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 17815554 - 17815614
Alignment:
Q  155 cttgtgaaccaaacatatttacaattaaagtccctcccttcccctcttttgaaccgaacat 215  Q
    ||||||||||||||| ||||  ||||||| || ||||| ||| |||||||||||| |||||    
T  17815554 cttgtgaaccaaacacattttaaattaaaatctctcccctcctctcttttgaaccaaacat 17815614  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 19392196 - 19392241
Alignment:
Q  19 ttcgaacccctgtcacgatgttcggcctagcaattttggcattttt 64  Q
    |||||||||| |||||| ||| |||||||||||||| |||||||||    
T  19392196 ttcgaaccccggtcacggtgtccggcctagcaatttcggcattttt 19392241  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 42739657 - 42739709
Alignment:
Q  147 cccctccccttgtgaaccaaacatatttacaattaaagtccctcccttcccct 199  Q
    |||||||||||||||||||||||||| |   |||||| |||||||| ||||||    
T  42739657 cccctccccttgtgaaccaaacatatatttgattaaaatccctcccctcccct 42739709  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 13173473 - 13173420
Alignment:
Q  147 cccctccccttgtgaaccaaacatatttacaattaaagtccctcccttcccctc 200  Q
    |||||| ||||||||||||||||| | |  ||||||| ||||||||||||||||    
T  13173473 cccctcaccttgtgaaccaaacatgtgtttaattaaaatccctcccttcccctc 13173420  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 26780798 - 26780871
Alignment:
Q  147 cccctccccttgtgaaccaaacatatttacaattaaagtccc-----tcccttcccctcttttgaaccgaacat 215  Q
    ||||||||| |||||||||||||||| |  ||||||| ||||     |||| ||||||||||||||||||||||    
T  26780798 cccctccccatgtgaaccaaacatatatttaattaaaatcccttccgtcccctcccctcttttgaaccgaacat 26780871  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 22999143 - 22999075
Alignment:
Q  19 ttcgaacccctgtcacgatgttcggcctagcaattttggcatttttgcctgttgagctgggaattatgg 87  Q
    |||||||||| |||| || || ||| ||| |||||||||||||||| || |||||||| ||| ||||||    
T  22999143 ttcgaaccccggtcatgacgtccggactaacaattttggcatttttacccgttgagctaggacttatgg 22999075  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 31920785 - 31920853
Alignment:
Q  147 cccctccccttgtgaaccaaacatatttacaattaaagtccctcccttcccctcttttgaaccgaacat 215  Q
    |||||||||  |||||||||||| ||||  ||||||| |||||||| | ||||| |||||||| |||||    
T  31920785 cccctccccacgtgaaccaaacacatttttaattaaaatccctccccttccctcctttgaaccaaacat 31920853  T

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