View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12794_low_6 (Length: 263)
Name: NF12794_low_6
Description: NF12794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12794_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 25954734 - 25954968
Alignment:
| Q |
20 |
catatcaagtgagaatgagtatcttaagaaacattatttggtgattaaacattatgtgtcaatcttttctttcagcacttgacatacacctcaaccaaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25954734 |
catatcaagtgagaatgagtatcttaagaaacattatttggtgattaaacattatgtgtcaatcttttctttcagcacttgacatacacctcaaccaaaa |
25954833 |
T |
|
| Q |
120 |
ccaacccaacagcacaaagaatagattaagcagaaagacaagaatggaattgcctttagcaccaagtaatctagtttcaacctcttctttttcctcctcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25954834 |
ccaacccaacagcacaaagaatagattaagcagaaagacaagaatggaattgcctttagcaccaagtaatctagtttcaacctcttctttttcctcctcc |
25954933 |
T |
|
| Q |
220 |
aattcatgttgacccttatcatctttactctctgc |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
25954934 |
aattcatgttgacccttatcatctttactctctgc |
25954968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 25945258 - 25945393
Alignment:
| Q |
72 |
tatgtgtcaatctttt-ctttcagcacttgacatacacctcaaccaaaaccaacccaacagcacaaagaatagattaagcagaaagacaagaatggaatt |
170 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25945258 |
tatgtatcaatctttttctttcagcaattgacataaacctcaaccaaaaccaacccaacagcacaaagaatagattaagcagaaaggcaagaatggaatt |
25945357 |
T |
|
| Q |
171 |
gcctttagcaccaagtaatctagtttcaacctcttc |
206 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||| |
|
|
| T |
25945358 |
gcctttagaaccaagtaatctagttccaacctcttc |
25945393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 25945687 - 25945846
Alignment:
| Q |
73 |
atgtgtcaatcttttctttcagcacttgacatacacctcaaccaaaaccaacccaacagcacaaagaatagattaagcagaaagacaagaatggaattgc |
172 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| || ||| |||||| ||| ||| ||| || |||| |||||| |
|
|
| T |
25945687 |
atgtatcaatcttttctttcagcacttggcatacacctcaaccaaaaccaactaaacaacagaaataatagactaaacaggcagagaataatgtaattgc |
25945786 |
T |
|
| Q |
173 |
ctttagcaccaagtaatctagtttcaacctcttctttttcctcctccaattcatgttgac |
232 |
Q |
| |
|
||| | ||| |||| |||||||| || |||| | ||||| | ||||||||||||||||| |
|
|
| T |
25945787 |
cttcaacacgaagtgatctagttccaggctctccattttcgtgctccaattcatgttgac |
25945846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University