View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12794_low_7 (Length: 253)
Name: NF12794_low_7
Description: NF12794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12794_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 2615508 - 2615704
Alignment:
| Q |
50 |
aacatttaagagatattgaatttaagatatctctttgtctaatgaagctgcaaacttacctaaaaaataagttgatatatccaaattcaatagctctttg |
149 |
Q |
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| T |
2615508 |
aacatttaagagatattgaatttaagatatctctttgtctaaagaagctgcaaacttacctaaaaaataagttgatatatccaaattcaatagctctttg |
2615607 |
T |
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| Q |
150 |
tctatagaagctactaacttacctccacttaaaatttaagagatattgaatttgaatctgattaaaacaatttttaatcaaattttacttacctatg |
246 |
Q |
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| T |
2615608 |
tctatagaagctactaacttacctccacttaacatttaagagatattgaatttgaatctgattaaaacaatttttaaccaaattttacttacctatg |
2615704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 2615403 - 2615438
Alignment:
| Q |
18 |
tatttcagcaacatgctttttagggcatgttcaaca |
53 |
Q |
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| T |
2615403 |
tatttcagcaacatgctttttagggcgtgttcaaca |
2615438 |
T |
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