View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12795_high_15 (Length: 226)
Name: NF12795_high_15
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 33581007 - 33581197
Alignment:
| Q |
3 |
aaaggagatgtcttttcttgtaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactg |
102 |
Q |
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| T |
33581007 |
aaaggagatgtcttttcttgaaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactt |
33581106 |
T |
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| Q |
103 |
aaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagttgaagttgcaagaccacaacttcgttgaaatccttcaacaaaa |
193 |
Q |
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| T |
33581107 |
aacctcggtagtctccttcaattgacaaagcctttgcaagctgtgagttgaagttacaagaccacaacttcgttgaaatccttcaacaaaa |
33581197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 32356315 - 32356505
Alignment:
| Q |
3 |
aaaggagatgtcttttcttgtaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactg |
102 |
Q |
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| T |
32356315 |
aaaggagatgtcttttcttgtagcctttcactactaacctgcaactctgggtagcgtacttcagtagcacaggcatatccacattctaaggcggagattg |
32356414 |
T |
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| Q |
103 |
aaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagttgaagttgcaagaccacaacttcgttgaaatccttcaacaaaa |
193 |
Q |
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| T |
32356415 |
aaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagttgaagttgcaagaccacaactttgttgaaatccttcaataaaa |
32356505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 17922281 - 17922440
Alignment:
| Q |
34 |
aactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttcaattgacaaagc |
133 |
Q |
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|||||||||||| ||||||||| |||||| | ||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||| ||| |
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| T |
17922281 |
aactaacctgcatctctgggtagggtactttactagcacagacatatccacgttctatggccgagactgaaccccggtagtctccttcagttgacagagc |
17922380 |
T |
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| Q |
134 |
atttgcaagctgtgagttgaagttgcaagaccacaacttcgttgaaatccttcaacaaaa |
193 |
Q |
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| T |
17922381 |
atttgcaagctgtgagttgaagttgcaagaccacaacttcattgaaaacctttaacaaaa |
17922440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 17956035 - 17956190
Alignment:
| Q |
38 |
aacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttcaattgacaaagcattt |
137 |
Q |
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|||| |||| ||||| ||| ||||||||| |||| || || || || ||||||| ||||| ||||| | |||| |||||||| |||| ||||| ||| |
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| T |
17956035 |
aaccagcaactctggatagcgtacttcagtagcatagttatgtcaacgttctaagagggagagtgaactcgggtaccctccttcatttgaaaaagctttt |
17956134 |
T |
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| Q |
138 |
gcaagctgtgagttgaagttgcaagaccacaacttcgttgaaatccttcaacaaaa |
193 |
Q |
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||||||| ||||||| ||| || |||| | |||||||||||| || | ||||||| |
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| T |
17956135 |
gcaagcttggagttgatgttacatgacctccacttcgttgaaaaccgttaacaaaa |
17956190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 17969494 - 17969586
Alignment:
| Q |
101 |
tgaaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagttgaagttgcaagaccacaacttcgttgaaatccttcaacaaaa |
193 |
Q |
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||||||| ||||||||| ||| ||| ||||||||||| | ||| |||||| ||||||||| || ||||| ||||||| |||| ||||||| |
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| T |
17969494 |
tgaacccgggtagtctcaatcagctgaagaagcatttgcatgttgtaagttgaggttgcaagaacaaaactttgttgaaaacctttaacaaaa |
17969586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 8024603 - 8024690
Alignment:
| Q |
34 |
aactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttc |
121 |
Q |
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| T |
8024603 |
aactaacctgcaactctgggtagggtactttagtagcacagacatatccacgttctaaggccgagactgaaccctggtagtctccttc |
8024690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 8024847 - 8024907
Alignment:
| Q |
118 |
cttcaattgacaaagcatttgcaagctgtgagttgaagttgcaagaccacaacttcgttga |
178 |
Q |
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| T |
8024847 |
cttcagttgccaaagcatttgcaagctgtaagttgaagttgcaagaccacaacttcgttga |
8024907 |
T |
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