View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12795_high_16 (Length: 217)

Name: NF12795_high_16
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12795_high_16
NF12795_high_16
[»] chr7 (2 HSPs)
chr7 (1-206)||(30229622-30229827)
chr7 (35-192)||(30232361-30232527)
[»] chr6 (2 HSPs)
chr6 (129-192)||(34689399-34689462)
chr6 (45-95)||(34689485-34689536)
[»] chr2 (5 HSPs)
chr2 (129-192)||(26987292-26987355)
chr2 (48-197)||(27077852-27078011)
chr2 (106-171)||(27100241-27100306)
chr2 (45-95)||(26987378-26987429)
chr2 (106-171)||(27026862-27026927)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30229827 - 30229622
Alignment:
Q  1 gtaaaaggggaaaaccagttcagtaaaatcaaacaacatatatataagaatgcaagtctaacaagcttaggttgtaccaatgaaatagttcaaaatgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30229827 gtaaaaggggaaaaccagttcagtaaaatcaaacaacatatatataagaatgcaagtctaacaagcttaggttgtaccaatgaaatagttcaaaatgaaa 30229728  T
Q  101 gattgaactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaatttacgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  30229727 gattgaactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaactgtgtgaataaacttttggcaatttacatg 30229628  T
Q  201 aacgag 206  Q
     |||||    
T  30229627 tacgag 30229622  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 35 - 192
Target Start/End: Complemental strand, 30232527 - 30232361
Alignment:
Q  35 aacatatatataagaatgcaagtctaacaagcttaggttgtaccaatgaaatagttcaaaa-------tgaaagat--tgaactaacagagattatcaca 125  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||       | || | |  | ||||||||||| || |||||    
T  30232527 aacatatacttaagaatgcaagtctaacaagcttaggctgtaccaatgaaatagttcaaaagagcaattcaaggctgataaactaacagaggttttcaca 30232428  T
Q  126 ttatttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaa 192  Q
    |  ||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||| |||||||||    
T  30232427 tcgtttcttaaaaatgttttggtttacttgctctaaaggagaaactgtgtaaataaatttttggcaa 30232361  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 34689462 - 34689399
Alignment:
Q  129 tttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaa 192  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||| |||||||||    
T  34689462 tttcttaaaaatgttttggtttacttgctcttaaggagaaactgtgtgaataaatttttggcaa 34689399  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 34689536 - 34689485
Alignment:
Q  45 taagaatgcaagtctaacaagctt-aggttgtaccaatgaaatagttcaaaa 95  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  34689536 taagaatgcaagtctaacaagcttaaggctgtaccaatgaaatagtgcaaaa 34689485  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 26987355 - 26987292
Alignment:
Q  129 tttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaa 192  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||| |||||||||    
T  26987355 tttcttaaaaatgttttggtttacttgctcttaaggagaaactgtgtgaataaatttttggcaa 26987292  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 27077852 - 27078011
Alignment:
Q  48 gaatgcaagtctaacaagcttaggttgtaccaatgaaatagttcaaaa-----tgaa---agattgaactaacagagattatcacattatttcttaaaaa 139  Q
    |||||||||||||||||||||| | |||||||| ||||||||||||||     | ||   ||||  |||||||||||||| ||||||  |||| ||||||    
T  27077852 gaatgcaagtctaacaagcttaagctgtaccaacgaaatagttcaaaagagcattaaggcagata-aactaacagagattttcacatcgtttcctaaaaa 27077950  T
Q  140 tg----gtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaatttac 197  Q
    ||    | || |||||||||||||||||||| |||| |||||||||| ||||||||||||||    
T  27077951 tgttttggtttgtttacttgctctaaaggag-aactgtgtgaataaatttttggcaatttac 27078011  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 27100241 - 27100306
Alignment:
Q  106 aactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaact 171  Q
    |||||||||| |||||||||| |||||||||||||| ||| |||| ||||| ||||||||||||||    
T  27100241 aactaacagaaattatcacataatttcttaaaaatgttttggtttgcttgcgctaaaggagaaact 27100306  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 26987429 - 26987378
Alignment:
Q  45 taagaatgcaagtctaacaagctt-aggttgtaccaatgaaatagttcaaaa 95  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  26987429 taagaatgcaagtctaacaagcttaaggctgtaccaatgaaatagtgcaaaa 26987378  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 27026927 - 27026862
Alignment:
Q  106 aactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaact 171  Q
    |||||||| ||| ||||||||  |||||| ||||||||||  ||||||||||||||||| ||||||    
T  27026927 aactaacaaagagtatcacatcctttcttcaaaatggtttgctttacttgctctaaaggtgaaact 27026862  T

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