View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12795_high_3 (Length: 379)
Name: NF12795_high_3
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 10969254 - 10968906
Alignment:
| Q |
16 |
aaccctaagtctttcgataaactataaataacatgaatgagatcaaggttgcacttcatttcttgtatgacttcactaacacttacatagcttggtgagg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10969254 |
aaccctaagtctttcgataaactataaataacatgaatgagatcaaggttgcacttcatttcttgtacgacttcactaacacttacatagcttggtgagg |
10969155 |
T |
|
| Q |
116 |
taaaaacagtggctgcatagatttcatcacaaactaaatggattgttttctcattgatgaaggttataagactctttagtgtctctttgtctaaggttgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10969154 |
taaaaacagtggctgcatagatttcatcacaaactaaatggattgttttctcattgatgaaggttataagactctttagtgtctctttgtctaaggttgt |
10969055 |
T |
|
| Q |
216 |
tcctaatgggttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgctttgttgtatgctacttcaagtgcttctcttgttatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10969054 |
tcctaatgggttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgcttttttgtatgctacttcaagtgcttctcttgttatt |
10968955 |
T |
|
| Q |
316 |
ttgaagttgttggagctatcacaatggacaggaattaattgaacctttg |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10968954 |
ttgaagttgttggagctatcacaatggacaggaattaattgaacctttg |
10968906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 7755766 - 7755896
Alignment:
| Q |
31 |
gataaactataaataacatgaatgagatcaaggttgcacttcatttcttgtatgacttcactaacacttacatagcttggtgaggtaaaaacagtggctg |
130 |
Q |
| |
|
||||| |||||||| | |||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||| |||| ||||| ||||| | ||| |
|
|
| T |
7755766 |
gataagctataaatgatgtgaatgagatcagatttgcatttcatttctagtatgacttcactaacacttgcataggttggagaggtgaaaactgcggcaa |
7755865 |
T |
|
| Q |
131 |
catagatttcatcacaaactaaatggattgt |
161 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||| |
|
|
| T |
7755866 |
cataaattctatcacaaacgaaatggattgt |
7755896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 187 - 352
Target Start/End: Original strand, 29964129 - 29964294
Alignment:
| Q |
187 |
ctctttagtgtctctttgtctaaggttgttcctaatgggttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgctttgttgt |
286 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||| || || || || ||||||||||| |||||||||||||||||||| | |||||||||||| || | |
|
|
| T |
29964129 |
ctctttagtgtatctttttctaatgttgttcctaaaggatttgatggatttgttatgattaacccttttacattgatgttttcttcttgtgcttttttat |
29964228 |
T |
|
| Q |
287 |
atgctacttcaagtgcttctcttgttattttgaagttgttggagctatcacaatggacaggaatta |
352 |
Q |
| |
|
||| |||||||||||||||||||||| ||||| ||||| ||||||| ||| ||||||||||||| |
|
|
| T |
29964229 |
gagcttcttcaagtgcttctcttgttatcttgaaattgtttgagctatgacattggacaggaatta |
29964294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University