View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12795_high_9 (Length: 289)

Name: NF12795_high_9
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12795_high_9
NF12795_high_9
[»] chr3 (37 HSPs)
chr3 (9-273)||(7500362-7500626)
chr3 (14-273)||(28561120-28561378)
chr3 (27-120)||(20676993-20677086)
chr3 (30-120)||(6213857-6213947)
chr3 (27-120)||(507966-508059)
chr3 (27-120)||(4750667-4750760)
chr3 (27-120)||(8781611-8781704)
chr3 (27-120)||(24666818-24666911)
chr3 (27-120)||(38201600-38201693)
chr3 (27-120)||(41690597-41690690)
chr3 (21-120)||(39379026-39379125)
chr3 (30-120)||(5583429-5583519)
chr3 (30-120)||(5869492-5869582)
chr3 (30-120)||(6494141-6494230)
chr3 (30-156)||(9384422-9384547)
chr3 (30-120)||(9985683-9985773)
chr3 (30-120)||(11276181-11276271)
chr3 (30-120)||(13128622-13128712)
chr3 (30-120)||(13376463-13376553)
chr3 (30-120)||(13387057-13387147)
chr3 (30-120)||(14472572-14472662)
chr3 (30-120)||(19785373-19785463)
chr3 (30-120)||(23764245-23764335)
chr3 (30-120)||(24387314-24387404)
chr3 (30-120)||(29465002-29465092)
chr3 (30-120)||(37873412-37873502)
chr3 (30-120)||(37881930-37882020)
chr3 (30-120)||(1787667-1787757)
chr3 (30-120)||(5540817-5540907)
chr3 (30-120)||(7798417-7798507)
chr3 (30-120)||(11209890-11209980)
chr3 (30-120)||(12241355-12241445)
chr3 (30-120)||(16394843-16394933)
chr3 (30-120)||(16438133-16438223)
chr3 (30-120)||(28318034-28318124)
chr3 (27-120)||(29937350-29937443)
chr3 (27-120)||(29986504-29986597)
[»] chr8 (19 HSPs)
chr8 (150-220)||(6886968-6887038)
chr8 (27-120)||(3352466-3352559)
chr8 (27-120)||(6158015-6158108)
chr8 (27-120)||(9348047-9348140)
chr8 (27-120)||(29083340-29083433)
chr8 (27-120)||(36084870-36084963)
chr8 (193-273)||(12794655-12794735)
chr8 (30-120)||(13692401-13692491)
chr8 (30-120)||(16743624-16743714)
chr8 (30-120)||(32081527-32081617)
chr8 (27-120)||(36299875-36299968)
chr8 (27-120)||(44488063-44488156)
chr8 (40-156)||(22669984-22670099)
chr8 (30-133)||(17292440-17292542)
chr8 (30-120)||(248760-248850)
chr8 (30-120)||(811861-811951)
chr8 (30-120)||(19135632-19135722)
chr8 (30-120)||(19231730-19231820)
chr8 (30-120)||(19425277-19425367)
[»] chr7 (20 HSPs)
chr7 (30-156)||(8624278-8624403)
chr7 (30-120)||(17953994-17954084)
chr7 (27-120)||(22096071-22096164)
chr7 (30-120)||(173823-173913)
chr7 (27-120)||(1994486-1994579)
chr7 (27-120)||(4218938-4219031)
chr7 (27-120)||(24741031-24741124)
chr7 (27-120)||(26657215-26657308)
chr7 (27-120)||(42872778-42872871)
chr7 (30-120)||(2709493-2709583)
chr7 (30-120)||(6871110-6871200)
chr7 (30-120)||(9440196-9440286)
chr7 (30-120)||(20997299-20997389)
chr7 (14-120)||(24831117-24831223)
chr7 (30-120)||(26393974-26394064)
chr7 (27-120)||(9092164-9092257)
chr7 (27-120)||(40045984-40046077)
chr7 (30-120)||(11012120-11012210)
chr7 (30-120)||(16313398-16313488)
chr7 (30-120)||(20986190-20986280)
[»] chr4 (21 HSPs)
chr4 (144-273)||(10081111-10081240)
chr4 (27-120)||(10744398-10744491)
chr4 (27-120)||(10958167-10958260)
chr4 (27-120)||(36025253-36025346)
chr4 (27-120)||(49514498-49514591)
chr4 (28-120)||(16262828-16262920)
chr4 (30-120)||(457527-457617)
chr4 (30-120)||(5019101-5019191)
chr4 (30-120)||(10297636-10297726)
chr4 (30-120)||(17925063-17925153)
chr4 (30-120)||(19948195-19948285)
chr4 (30-120)||(22003382-22003472)
chr4 (30-120)||(24647296-24647386)
chr4 (30-120)||(27663577-27663667)
chr4 (32-120)||(30930293-30930381)
chr4 (21-120)||(15200603-15200702)
chr4 (30-120)||(4991595-4991685)
chr4 (30-120)||(14839857-14839947)
chr4 (30-120)||(18756290-18756380)
chr4 (30-120)||(40460545-40460635)
chr4 (30-120)||(55749052-55749142)
[»] chr6 (20 HSPs)
chr6 (30-120)||(32965752-32965842)
chr6 (27-120)||(3668346-3668439)
chr6 (27-120)||(4637828-4637921)
chr6 (27-120)||(16955910-16956003)
chr6 (27-120)||(26032322-26032415)
chr6 (27-120)||(27348647-27348740)
chr6 (27-120)||(27409387-27409480)
chr6 (27-120)||(32304852-32304945)
chr6 (27-120)||(34810969-34811062)
chr6 (17-109)||(21126329-21126421)
chr6 (30-120)||(12861836-12861926)
chr6 (30-120)||(13920151-13920241)
chr6 (30-120)||(26040500-26040590)
chr6 (27-120)||(12720642-12720735)
chr6 (17-133)||(22811747-22811862)
chr6 (17-120)||(19955718-19955821)
chr6 (30-120)||(9116298-9116388)
chr6 (30-120)||(20033731-20033821)
chr6 (30-120)||(26871707-26871797)
chr6 (30-120)||(27500609-27500699)
[»] chr5 (37 HSPs)
chr5 (30-120)||(16000148-16000238)
chr5 (30-120)||(39356415-39356505)
chr5 (27-120)||(6979725-6979818)
chr5 (27-120)||(14033961-14034054)
chr5 (27-120)||(15743888-15743981)
chr5 (27-120)||(17610981-17611074)
chr5 (27-120)||(17722837-17722930)
chr5 (27-120)||(22150435-22150528)
chr5 (27-120)||(23300196-23300289)
chr5 (27-120)||(23365855-23365948)
chr5 (27-120)||(24570991-24571084)
chr5 (27-120)||(24823725-24823818)
chr5 (27-120)||(27049086-27049179)
chr5 (27-120)||(27464081-27464174)
chr5 (27-120)||(31352453-31352546)
chr5 (27-120)||(35219422-35219515)
chr5 (27-120)||(36589366-36589459)
chr5 (27-120)||(36691617-36691710)
chr5 (27-120)||(37736816-37736909)
chr5 (27-120)||(39497736-39497829)
chr5 (30-120)||(5297394-5297484)
chr5 (30-120)||(9339874-9339964)
chr5 (30-120)||(14564905-14564995)
chr5 (30-120)||(22680035-22680125)
chr5 (30-120)||(23700699-23700789)
chr5 (30-120)||(27619024-27619114)
chr5 (30-120)||(30234278-30234368)
chr5 (30-120)||(31837399-31837489)
chr5 (30-120)||(34055852-34055942)
chr5 (30-120)||(40394281-40394371)
chr5 (30-120)||(42046699-42046789)
chr5 (27-120)||(24811832-24811925)
chr5 (17-120)||(1118141-1118244)
chr5 (30-120)||(14453864-14453954)
chr5 (30-120)||(19467891-19467981)
chr5 (30-120)||(20783964-20784054)
chr5 (30-120)||(31443810-31443900)
[»] chr2 (19 HSPs)
chr2 (30-120)||(4216802-4216892)
chr2 (30-120)||(22937473-22937563)
chr2 (30-120)||(40247515-40247605)
chr2 (27-120)||(10273890-10273983)
chr2 (27-120)||(11398988-11399081)
chr2 (27-120)||(19306235-19306328)
chr2 (27-120)||(27228342-27228435)
chr2 (27-120)||(39173910-39174003)
chr2 (27-120)||(43352299-43352392)
chr2 (30-120)||(9766579-9766669)
chr2 (30-120)||(9901389-9901479)
chr2 (30-120)||(24331565-24331655)
chr2 (30-120)||(24418842-24418932)
chr2 (30-120)||(34794033-34794123)
chr2 (30-120)||(35259911-35260001)
chr2 (30-120)||(35270536-35270626)
chr2 (30-120)||(43089586-43089676)
chr2 (30-120)||(28725134-28725224)
chr2 (27-120)||(22778155-22778248)
[»] chr1 (16 HSPs)
chr1 (30-120)||(12737421-12737511)
chr1 (27-120)||(3178491-3178584)
chr1 (27-120)||(5840094-5840187)
chr1 (27-120)||(7514164-7514257)
chr1 (27-120)||(38101975-38102068)
chr1 (17-133)||(21128164-21128279)
chr1 (30-120)||(4174195-4174285)
chr1 (30-120)||(19184098-19184188)
chr1 (30-120)||(35641879-35641969)
chr1 (30-120)||(36240272-36240362)
chr1 (30-120)||(47611774-47611864)
chr1 (30-120)||(51649715-51649805)
chr1 (21-120)||(7693313-7693412)
chr1 (30-120)||(21870556-21870647)
chr1 (30-120)||(5643546-5643636)
chr1 (30-120)||(19163518-19163608)
[»] scaffold0015 (1 HSPs)
scaffold0015 (17-133)||(159991-160106)
[»] scaffold0382 (1 HSPs)
scaffold0382 (30-120)||(5122-5212)
[»] scaffold0249 (1 HSPs)
scaffold0249 (30-155)||(8799-8923)
[»] scaffold0035 (1 HSPs)
scaffold0035 (41-156)||(113443-113557)
[»] scaffold0056 (1 HSPs)
scaffold0056 (17-155)||(29444-29581)
[»] scaffold0047 (1 HSPs)
scaffold0047 (30-120)||(36691-36781)
[»] scaffold0453 (1 HSPs)
scaffold0453 (33-133)||(4680-4779)
[»] scaffold0022 (1 HSPs)
scaffold0022 (17-81)||(46821-46885)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 7500362 - 7500626
Alignment:
Q  9 agcagagatctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7500362 agcagagatctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaa 7500461  T
Q  109 aaggctcattttttaaattcaccactataaacacatctgattttcaaattagatgtttctttttcatttttagtttgtttgcataagacactaaacacat 208  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  7500462 aaggctcattttttaaattcaccactatgaacacatctgattttcaaattagatgtttctttttcatttttagtttatttgcagaagacactaaacacat 7500561  T
Q  209 cataagactcattcttgcttctgaggaatttcacccaaatccatctattaaagtcatcaacaatg 273  Q
    |||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  7500562 cataagactcattcttgcttttgaggaatttcactcaagtccatctgttaaagtcatcaacaatg 7500626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 28561378 - 28561120
Alignment:
Q  14 agatctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggc 113  Q
    |||||||||||| |||||||||  | |||| |  ||| || || || |||| |||||||||||||||| |||||  ||||| | |||  ||||||||||     
T  28561378 agatctatttttgctttctacagacccattgttatgtggagttataggagaagaaaaatcatggagaattccatgtgtttcgcaaaagttttcaaaaggt 28561279  T
Q  114 tcattttttaaattcaccactataaacacatctgattttcaaattagatgtttctttttcatttttagtttgtttgcataagacactaaacacatcataa 213  Q
    ||  |||  ||||||||||| || | ||| ||| ||||||||| ||| ||||||||||||||||| | |||||||||| || ||| ||||||| || |||    
T  28561278 tcgatttc-aaattcaccaccatgatcacttcttattttcaaaatagttgtttctttttcattttgaatttgtttgcaaaaaacattaaacacctcttaa 28561180  T
Q  214 gactcattcttgcttctgaggaatttcacccaaatccatctattaaagtcatcaacaatg 273  Q
    ||||| | ||||||||| |||||||||||| || |||| ||  |||||||||||| ||||    
T  28561179 gactcgtccttgcttctaaggaatttcacctaagtccacctgctaaagtcatcaataatg 28561120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 20677086 - 20676993
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| |||||||||| |||||   |||||| ||||| |||||| ||||||||||    
T  20677086 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaattccatgtttttcacaaaaaagttcaaatggctcatttt 20676993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 6213947 - 6213857
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||||||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  6213947 tctacaacctcattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 6213857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 508059 - 507966
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  508059 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 507966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 4750667 - 4750760
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  4750667 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 4750760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 8781611 - 8781704
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  8781611 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 8781704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 24666818 - 24666911
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  24666818 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 24666911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 38201600 - 38201693
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  38201600 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 38201693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 41690597 - 41690690
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  41690597 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 41690690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 39379026 - 39379125
Alignment:
Q  21 tttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||| || ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  39379026 ttttttctctctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 39379125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 5583519 - 5583429
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  5583519 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 5583429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 5869582 - 5869492
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  5869582 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 5869492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 6494230 - 6494141
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| |||||||||| |||||   |||||| ||||| |||||| ||||||||||    
T  6494230 tctacaacc-cattttgttgtggagttctaggagaagaaaattcatggagaattccatgtttttcacaaaaaagttcaaatggctcatttt 6494141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 9384547 - 9384422
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcattttttaaattca 129  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  |||||  |||||| ||||  |||||| |||||| | || ||||||     
T  9384547 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatatttttcacaaaaagattcaaatggctca-tattcaaattct 9384449  T
Q  130 ccactataaacacatctgattttcaaa 156  Q
    |||| || | ||| |||||||||||||    
T  9384448 ccaccatgatcacttctgattttcaaa 9384422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 9985773 - 9985683
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  9985773 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 9985683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 11276271 - 11276181
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  11276271 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 11276181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 13128622 - 13128712
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  13128622 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 13128712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 13376553 - 13376463
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  13376553 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 13376463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 13387147 - 13387057
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  13387147 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 13387057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 14472572 - 14472662
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  14472572 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 14472662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 19785373 - 19785463
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  19785373 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 19785463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 23764245 - 23764335
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  23764245 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 23764335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 24387404 - 24387314
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  24387404 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 24387314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 29465092 - 29465002
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  |||||  |||||| ||||  |||||| ||||||||||    
T  29465092 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatatttttcacaaaaagattcaaatggctcatttt 29465002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 37873412 - 37873502
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  37873412 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 37873502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 37881930 - 37882020
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  37881930 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 37882020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 1787757 - 1787667
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  1787757 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 1787667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 5540907 - 5540817
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| ||| |||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  5540907 tctacaactgcattttgttgtggagttctaggaggggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 5540817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 7798507 - 7798417
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  7798507 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 7798417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 11209980 - 11209890
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  11209980 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 11209890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 12241445 - 12241355
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||  ||||| |||||| ||||||||||    
T  12241445 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcataaaaaagttcaaatggctcatttt 12241355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 16394933 - 16394843
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  16394933 tctacaactccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 16394843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 16438223 - 16438133
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  16438223 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 16438133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 28318124 - 28318034
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| ||||||  |||||||||    
T  28318124 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatagctcatttt 28318034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 29937443 - 29937350
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| || || ||||||| || |||||   |||||| ||||  |||||| ||||||||||    
T  29937443 ctttctacaaccccattttgttgtggagttctaggagaagagaattcatggacaattccatgtttttcacaaaaagattcaaatggctcatttt 29937350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 29986597 - 29986504
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| || || ||||||| || |||||   |||||| ||||  |||||| ||||||||||    
T  29986597 ctttctacaaccccattttgttgtggagttctaggagaagagaattcatggacaattccatgtttttcacaaaaagattcaaatggctcatttt 29986504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 6887038 - 6886968
Alignment:
Q  150 tttcaaattagatgtttctttttcatttttagtttgtttgcataagacactaaacacatcataagactcat 220  Q
    ||||||| ||||||||||||||||||||| |||||||||||| || | ||||||||| ||||| |||||||    
T  6887038 tttcaaaatagatgtttctttttcattttgagtttgtttgcagaatatactaaacacctcatatgactcat 6886968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 3352559 - 3352466
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  3352559 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 3352466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 6158015 - 6158108
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  6158015 ctttctacaaccccattttgttgtggagttctaggagacgaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 6158108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 9348047 - 9348140
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  9348047 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 9348140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 29083340 - 29083433
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  29083340 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 29083433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 36084870 - 36084963
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  36084870 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 36084963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 12794655 - 12794735
Alignment:
Q  193 aagacactaaacacatcataagactcattcttgcttctgaggaatttcacccaaatccatctattaaagtcatcaacaatg 273  Q
    ||||||||||||||||| |||||| ||| ||||||||| || ||||||| |||| | |||||  |||||||| ||||||||    
T  12794655 aagacactaaacacatcgtaagacacatccttgcttctcagaaatttcatccaagttcatctgctaaagtcaccaacaatg 12794735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 13692491 - 13692401
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  13692491 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 13692401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 16743624 - 16743714
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  |||||  |||||| ||||  |||||| ||||||||||    
T  16743624 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatgccatatttttcacaaaaagattcaaatggctcatttt 16743714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 32081617 - 32081527
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  32081617 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 32081527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 36299875 - 36299968
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   ||||||  |||| |||||| ||||||||||    
T  36299875 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacagaaaagttcaaatggctcatttt 36299968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 44488063 - 44488156
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||  ||||| |||||| ||||||||||    
T  44488063 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcataaaaaagttcaaatggctcatttt 44488156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 22669984 - 22670099
Alignment:
Q  40 cattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcattttttaaattcaccactataaa 139  Q
    ||||||||||| || ||||| |||| || || ||||||| || |||||   |||||| |||||||||||| |||||| |||| ||||||||||| || |     
T  22669984 cattttgttgtggagttctaggagaagagaattcatggacaattccatttttttcacaaaaaatttcaaatggctca-ttttcaaattcaccaccatgat 22670082  T
Q  140 cacatctgattttcaaa 156  Q
    ||| ||||| |||||||    
T  22670083 cacttctgactttcaaa 22670099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 17292542 - 17292440
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcattttttaaattca 129  Q
    ||||||||| ||||||||||| || ||||| |||| || || ||||||| || |||||   |||||| ||||| |||||| |||||| |||| |||||||    
T  17292542 tctacaaccccattttgttgtggagttctaggagaagagaattcatggacaattccatgtttttcacaaaaaagttcaaatggctca-ttttcaaattca 17292444  T
Q  130 ccac 133  Q
    ||||    
T  17292443 ccac 17292440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 248760 - 248850
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| | ||||||||    
T  248760 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatgactcatttt 248850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 811861 - 811951
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| | ||||||||    
T  811861 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatgactcatttt 811951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 19135632 - 19135722
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| |||||||| |  ||||   |||||| ||||| |||||| ||||||||||    
T  19135632 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagtatcccatgtttttcacaaaaaagttcaaatggctcatttt 19135722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 19231730 - 19231820
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  19231730 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 19231820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 19425277 - 19425367
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  19425277 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 19425367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 8624278 - 8624403
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcattttttaaattca 129  Q
    ||||||||| ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| |||||| |||| ||||||     
T  8624278 tctacaaccccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctca-ttttcaaattct 8624376  T
Q  130 ccactataaacacatctgattttcaaa 156  Q
    |||| |||| ||| ||||| |||||||    
T  8624377 ccaccataatcacttctgactttcaaa 8624403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 17954084 - 17953994
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||||||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  17954084 tctacaacctcattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 17953994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 22096071 - 22096164
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  22096071 ctttctacaaccccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 22096164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 173823 - 173913
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  173823 tctacaaccccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 173913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 1994486 - 1994579
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  1994486 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 1994579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 4218938 - 4219031
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  4218938 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 4219031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 24741031 - 24741124
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  24741031 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 24741124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 26657308 - 26657215
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  26657308 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 26657215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 42872778 - 42872871
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  42872778 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 42872871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 2709583 - 2709493
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  2709583 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 2709493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 6871200 - 6871110
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  6871200 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 6871110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 9440196 - 9440286
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  9440196 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 9440286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 20997389 - 20997299
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  20997389 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 20997299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 24831117 - 24831223
Alignment:
Q  14 agatctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggc 113  Q
    |||||||||  | |||||||||||||||||||||||| || ||| |||||| || || ||||||| || ||||||  |||||| |||||  | ||| |||    
T  24831117 agatctattacttctttctacaacctcattttgttgtggagttcaaagagaagagaattcatggacaattccatatttttcacaaaaaaaattaaatggc 24831216  T
Q  114 tcatttt 120  Q
    |||||||    
T  24831217 tcatttt 24831223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 26394064 - 26393974
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  26394064 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 26393974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 9092164 - 9092257
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| |||||| |||  ||||   |||||| ||||| |||||| ||||||||||    
T  9092164 ctttctacaaccccattttgttgtggagttctacgagaagaaaactcatggtgaatcccatgtttttcacaaaaaagttcaaatggctcatttt 9092257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 40046077 - 40045984
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| || || ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  40046077 ctttctacaaccccattttgttgtggagttctaggagaagagaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 40045984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 11012120 - 11012210
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| ||||||  |||||||||    
T  11012120 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatagctcatttt 11012210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 16313488 - 16313398
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| |||||||||||||| ||||| ||||||| || ||||||| || |||||   |||||| ||||  |||||| || |||||||    
T  16313488 tctacaaccccattttgttgtagagttctaggagaggagaattcatggaaaattccatgtttttcacaaaaagattcaaatggatcatttt 16313398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 20986190 - 20986280
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||| ||  ||||   |||||| ||||| |||||| ||||||||||    
T  20986190 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggacaatcccatgtttttcacaaaaaagttcaaatggctcatttt 20986280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 273
Target Start/End: Complemental strand, 10081240 - 10081111
Alignment:
Q  144 tctgattttcaaattagatgtttctttttcatttttagtttgtttgcataagacactaaacacatcataagactcattcttgcttctgaggaatttcacc 243  Q
    ||||||||||||| ||||| ||   |||||||||| | |||||||||| |||| |||||| |||||||||||||||| ||||||| | |  | ||||| |    
T  10081240 tctgattttcaaaatagatattctcttttcattttgaatttgtttgcagaagatactaaatacatcataagactcatccttgcttttcaatagtttcagc 10081141  T
Q  244 caaatccatctattaaagtcatcaacaatg 273  Q
     || ||||| |  |||||||||||||||||    
T  10081140 aaagtccatatgctaaagtcatcaacaatg 10081111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 10744491 - 10744398
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  10744491 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 10744398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 10958260 - 10958167
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  10958260 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 10958167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 36025253 - 36025346
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  36025253 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 36025346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 49514498 - 49514591
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  49514498 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaacttcaaatggctcatttt 49514591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 16262828 - 16262920
Alignment:
Q  28 tttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  16262828 tttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 16262920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 457527 - 457617
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  457527 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 457617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 5019101 - 5019191
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  5019101 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 5019191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 10297636 - 10297726
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  10297636 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 10297726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 17925063 - 17925153
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  17925063 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 17925153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 19948285 - 19948195
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  19948285 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 19948195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 22003382 - 22003472
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  22003382 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 22003472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 24647296 - 24647386
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  |||||  |||||| ||||| |||||| | ||||||||    
T  24647296 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatatttttcacaaaaaagttcaaatgactcatttt 24647386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 27663577 - 27663667
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  27663577 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 27663667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 30930381 - 30930293
Alignment:
Q  32 tacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  30930381 tacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 30930293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 15200702 - 15200603
Alignment:
Q  21 tttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||| || ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  15200702 ttttttctctctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 15200603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 4991685 - 4991595
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  |||    |||||| ||||| |||||| ||||||||||    
T  4991685 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccacgtttttcacaaaaaagttcaaatggctcatttt 4991595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 14839947 - 14839857
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  14839947 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 14839857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 18756380 - 18756290
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  18756380 tctacaactccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 18756290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 40460635 - 40460545
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  40460635 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 40460545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 55749142 - 55749052
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  |||    |||||| ||||| |||||| ||||||||||    
T  55749142 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccaagtttttcacaaaaaagttcaaatggctcatttt 55749052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 32965842 - 32965752
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  32965842 tctacaaccccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 32965752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 3668346 - 3668439
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  3668346 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 3668439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 4637828 - 4637921
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  4637828 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 4637921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 16955910 - 16956003
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||||||||||||||| || ||||| |||| ||||| |||||| |||  ||||   |||||| ||||| |||||| ||||||||||    
T  16955910 ctttctacaacctcattttgttgtggagttctaggagaagaaaactcatggtgaatcccatgtttttcacaaaaaagttcaaatggctcatttt 16956003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 26032322 - 26032415
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  26032322 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 26032415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 27348647 - 27348740
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  27348647 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 27348740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 27409387 - 27409480
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  27409387 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 27409480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 32304945 - 32304852
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  32304945 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 32304852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 34811062 - 34810969
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  34811062 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 34810969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 21126329 - 21126421
Alignment:
Q  17 tctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaa 109  Q
    |||||| || |||||||||||||||||||||||| || ||||| ||||||| || ||||||| || |||||   |||||| ||||| ||||||    
T  21126329 tctattctttctttctacaacctcattttgttgtggagttctaggagaggagaattcatggacaattccatgtttttcacaaaaaaattcaaa 21126421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 12861836 - 12861926
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||| ||||||||||  ||||   ||| || ||||| |||||| ||||||||||    
T  12861836 tctacaaccccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttaacaaaaaagttcaaatggctcatttt 12861926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 13920151 - 13920241
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  13920151 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 13920241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 26040500 - 26040590
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  26040500 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 26040590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 12720735 - 12720642
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   ||||||  |||| |||||| ||||||||||    
T  12720735 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacagaaaagttcaaatggctcatttt 12720642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 22811747 - 22811862
Alignment:
Q  17 tctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctca 116  Q
    |||||| || || ||||||||| ||||||||||| || ||||| |||| || || ||||||| || |||||   |||||| ||||| |||||| ||||||    
T  22811747 tctattctttctctctacaaccccattttgttgtggagttctaggagaagagaattcatggacaattccatgtttttcacaaaaaaattcaaatggctca 22811846  T
Q  117 ttttttaaattcaccac 133  Q
    |||| | ||||||||||    
T  22811847 ttttct-aattcaccac 22811862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 19955821 - 19955718
Alignment:
Q  17 tctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctca 116  Q
    |||||| || || ||||||||| ||||||||||| || ||||| |||| || || ||||||| || |||||   |||||| ||||| |||||| ||||||    
T  19955821 tctattctttctctctacaaccccattttgttgtggagttctaggagaagagaattcatggacaattccatgtttttcacaaaaaagttcaaatggctca 19955722  T
Q  117 tttt 120  Q
    ||||    
T  19955721 tttt 19955718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 9116388 - 9116298
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| | ||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  9116388 tctacaaccccattttgttgtggagttctaggagaagaaaattaatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 9116298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 20033821 - 20033731
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  20033821 tctacaactccattttgttgtggagttctaggagaggaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 20033731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 26871707 - 26871797
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||| ||||||| ||  ||||   |||||| ||| | |||||| ||||||||||    
T  26871707 tctacaaccccattttgttgtggagttctaggagaggaaaactcatggaaaatcccatgtttttcacaaaagagttcaaatggctcatttt 26871797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 27500609 - 27500699
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| || || ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  27500609 tctacaaccccattttgttgtggagttctaggagaagagaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 27500699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 16000148 - 16000238
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||||||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  16000148 tctacaacctcattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 16000238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 39356505 - 39356415
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  |||||  |||||| ||||| |||||| ||||||||||    
T  39356505 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatatttttcacaaaaaagttcaaatggctcatttt 39356415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 6979818 - 6979725
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  6979818 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 6979725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 14034054 - 14033961
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  14034054 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 14033961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 15743981 - 15743888
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  15743981 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 15743888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 17611074 - 17610981
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  17611074 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 17610981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 17722930 - 17722837
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  17722930 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 17722837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 22150528 - 22150435
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  22150528 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 22150435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 23300289 - 23300196
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  23300289 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 23300196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 23365948 - 23365855
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  23365948 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 23365855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 24571084 - 24570991
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  24571084 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 24570991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 24823725 - 24823818
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  24823725 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 24823818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 27049086 - 27049179
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  27049086 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaaattcaaatggctcatttt 27049179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 27464174 - 27464081
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  27464174 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 27464081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 31352546 - 31352453
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  31352546 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 31352453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 35219515 - 35219422
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  35219515 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 35219422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 36589366 - 36589459
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  36589366 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 36589459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 36691710 - 36691617
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  36691710 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 36691617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 37736816 - 37736909
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  37736816 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 37736909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 39497736 - 39497829
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  39497736 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 39497829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 5297394 - 5297484
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  5297394 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 5297484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 9339964 - 9339874
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  9339964 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 9339874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 14564905 - 14564995
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  14564905 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 14564995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 22680125 - 22680035
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  22680125 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 22680035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 23700789 - 23700699
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  23700789 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 23700699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 27619024 - 27619114
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  27619024 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 27619114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 30234278 - 30234368
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  30234278 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 30234368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 31837489 - 31837399
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  31837489 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 31837399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 34055942 - 34055852
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| ||||||| || ||||||||||  |||||  |||||| ||||  |||||| ||||||||||    
T  34055942 tctacaaccccattttgttgtggagttctaggagaggagaattcatggagaatcccatatttttcacaaaaagattcaaatggctcatttt 34055852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 40394371 - 40394281
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  40394371 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 40394281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 42046789 - 42046699
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  42046789 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 42046699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 24811925 - 24811832
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| |||||| |||  ||||   |||||| ||||| |||||| ||||||||||    
T  24811925 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggtgaatcccatgtttttcacaaaaaagttcaaatggctcatttt 24811832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 1118141 - 1118244
Alignment:
Q  17 tctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctca 116  Q
    |||||| || || ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||    
T  1118141 tctattctttctctctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctca 1118240  T
Q  117 tttt 120  Q
    ||||    
T  1118241 tttt 1118244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 14453864 - 14453954
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| |||||||| |  ||||   |||||| ||||| |||||| ||||||||||    
T  14453864 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagtatcccatgtttttcacaaaaaagttcaaatggctcatttt 14453954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 19467981 - 19467891
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  19467981 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 19467891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 20784054 - 20783964
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || |||||||||| || || ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  20784054 tctacaaccccattttgttgtggagttctaagagaagagaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 20783964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 31443900 - 31443810
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  31443900 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaataccatgtttttcacaaaaagattcaaatggctcatttt 31443810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 4216802 - 4216892
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  4216802 tctacaaccccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 4216892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 22937563 - 22937473
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  22937563 tctacaaccccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 22937473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 40247515 - 40247605
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  40247515 tctacaaccccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 40247605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 10273890 - 10273983
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  10273890 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 10273983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 11399081 - 11398988
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  11399081 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 11398988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 19306328 - 19306235
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  19306328 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 19306235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 27228342 - 27228435
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  27228342 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 27228435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 39174003 - 39173910
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  39174003 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 39173910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 43352299 - 43352392
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  43352299 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 43352392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 9766669 - 9766579
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  9766669 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 9766579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 9901479 - 9901389
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  9901479 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 9901389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 24331655 - 24331565
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  24331655 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 24331565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 24418932 - 24418842
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| |||||||||| |||||   |||||| ||||  |||||| ||||||||||    
T  24418932 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaattccatgtttttcacaaaaagattcaaatggctcatttt 24418842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 34794123 - 34794033
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  34794123 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaaattcaaatggctcatttt 34794033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 35259911 - 35260001
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  35259911 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 35260001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 35270536 - 35270626
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  35270536 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 35270626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 43089586 - 43089676
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  43089586 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 43089676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 28725224 - 28725134
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  28725224 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 28725134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 22778155 - 22778248
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| || || ||||||| || |||||   |||||| ||||  |||||| ||||||||||    
T  22778155 ctttctacaaccccattttgttgtggagttctaggagaagagaattcatggacaattccatgtttttcacaaaaagattcaaatggctcatttt 22778248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 12737421 - 12737511
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  |||||  |||||| ||||| |||||| ||||||||||    
T  12737421 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatatttttcacaaaaaagttcaaatggctcatttt 12737511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 3178491 - 3178584
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  3178491 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 3178584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 5840094 - 5840187
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  5840094 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 5840187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 7514164 - 7514257
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  7514164 ctttctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 7514257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 38101975 - 38102068
Alignment:
Q  27 ctttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    |||||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  38101975 ctttctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 38102068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 21128279 - 21128164
Alignment:
Q  17 tctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctca 116  Q
    |||||| || || ||||||||| ||||||||||| || ||||| |||| || || ||||||| || |||||   |||||| |||||||||||| ||||||    
T  21128279 tctattctttctctctacaaccccattttgttgtggagttctaggagaagataattcatggataattccatgtttttcacaaaaaatttcaaatggctca 21128180  T
Q  117 ttttttaaattcaccac 133  Q
     |||| |||||||||||    
T  21128179 -ttttcaaattcaccac 21128164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 4174195 - 4174285
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  4174195 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 4174285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 19184098 - 19184188
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  19184098 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 19184188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 35641969 - 35641879
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  35641969 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 35641879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 36240362 - 36240272
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  36240362 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 36240272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 47611864 - 47611774
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  47611864 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 47611774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 51649805 - 51649715
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||  ||||||||||| || ||||| |||||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  51649805 tctacaactccattttgttgtggagttctaggagaggaaaactcatggagaatcccatgtttttcacaaaaaaattcaaatggctcatttt 51649715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 7693412 - 7693313
Alignment:
Q  21 tttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||| || ||||||||||||||||||||| || ||||| |||| ||||| |||||||| |  ||||   |||||| ||||  |||||| ||||||||||    
T  7693412 ttttttctctctacaacctcattttgttgtggagttctaggagaagaaaattcatggagtatcccatgtttttcacaaaaagattcaaatggctcatttt 7693313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 21870556 - 21870647
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagag-aggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| ||| ||||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  21870556 tctacaaccccattttgttgtggagttctaggagaaggaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 21870647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 5643636 - 5643546
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   ||| || ||||| |||||| ||||||||||    
T  5643636 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgttttttacaaaaaagttcaaatggctcatttt 5643546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 19163608 - 19163518
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| || || |||||||||| |||||   |||||| ||||  |||||| ||||||||||    
T  19163608 tctacaaccccattttgttgtggagttctaggagaagagaattcatggagaattccatgtttttcacaaaaagattcaaatggctcatttt 19163518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 160106 - 159991
Alignment:
Q  17 tctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctca 116  Q
    |||||| || |||||||||||| ||||||||||| || ||||| |||| || || |||||||||| |||||   |||||| ||||| |||||| | ||||    
T  160106 tctattctttctttctacaaccccattttgttgtggagttctaggagaagagaattcatggagaattccatgtttttcacaaaaaagttcaaatgactca 160007  T
Q  117 ttttttaaattcaccac 133  Q
     |||| |||||||||||    
T  160006 -ttttcaaattcaccac 159991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 5212 - 5122
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||| |||||| ||||||||||    
T  5212 tctacaaccccattttgttgtggagttctaggagaagaaaactcatggagaatcccatgtttttcacaaaaaagttcaaatggctcatttt 5122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 8923 - 8799
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcattttttaaattca 129  Q
    ||||||||| ||||||||||| || ||||| |||| || || ||||||| || ||||||  |||||| ||||| |||||| | |||| |||| |||||||    
T  8923 tctacaaccccattttgttgtggagttctaggagaagagaattcatggacaattccatatttttcacaaaaaagttcaaatgactca-ttttcaaattca 8825  T
Q  130 ccactataaacacatctgattttcaa 155  Q
    |||| || | ||| ||||| ||||||    
T  8824 ccaccatgatcacttctgactttcaa 8799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 113557 - 113443
Alignment:
Q  41 attttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcattttttaaattcaccactataaac 140  Q
    |||||||||| || ||||| |||| || || ||||||| || |||||   |||||| |||||||||||| |||||| |||| ||||||||||| || | |    
T  113557 attttgttgtggagttctaggagaagagaattcatggacaattccatgtttttcacaaaaaatttcaaatggctca-ttttcaaattcaccaccatgatc 113459  T
Q  141 acatctgattttcaaa 156  Q
    || ||||| |||||||    
T  113458 acttctgactttcaaa 113443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 29581 - 29444
Alignment:
Q  17 tctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctca 116  Q
    |||||| || |||||||||||| ||||||||||  || || || |||| || || ||||||| || |||||   |||||| ||||| |||||| ||||||    
T  29581 tctattctttctttctacaaccccattttgttgaggagttataggagaagagaattcatggacaattccatgtttttcacaaaaaagttcaaatggctca 29482  T
Q  117 ttttttaaattcaccactataaacacatctgattttcaa 155  Q
     |||| ||||||||||| || | ||| ||||| ||||||    
T  29481 -ttttcaaattcaccaccatgatcacttctgactttcaa 29444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 36781 - 36691
Alignment:
Q  30 tctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcatttt 120  Q
    ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||  ||||   |||||| ||||  |||||| ||||||||||    
T  36781 tctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaatcccatgtttttcacaaaaagattcaaatggctcatttt 36691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 4680 - 4779
Alignment:
Q  33 acaacctcattttgttgtagatttctaagagaggaaaaatcatggagaaatccataagtttcaccaaaaatttcaaaaggctcattttttaaattcacca 132  Q
    |||||| ||||||||||| || ||||| |||| || || ||||||| || ||||||  |||||| ||||| |||||| | |||| |||| ||||||||||    
T  4680 acaaccccattttgttgtggagttctaggagaagagaattcatggacaattccatatttttcacaaaaaagttcaaatgactca-ttttcaaattcacca 4778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 46885 - 46821
Alignment:
Q  17 tctatttttactttctacaacctcattttgttgtagatttctaagagaggaaaaatcatggagaa 81  Q
    |||||| || || ||||||||| ||||||||||| || ||||| |||| ||||| ||||||||||    
T  46885 tctattctttctctctacaaccccattttgttgtggagttctaggagaagaaaattcatggagaa 46821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University