View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12795_low_1 (Length: 498)

Name: NF12795_low_1
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12795_low_1
NF12795_low_1
[»] scaffold0018 (1 HSPs)
scaffold0018 (19-495)||(69784-70275)
[»] chr8 (9 HSPs)
chr8 (223-334)||(29414358-29414469)
chr8 (223-330)||(35393714-35393823)
chr8 (223-332)||(24068140-24068250)
chr8 (255-335)||(26415560-26415640)
chr8 (40-96)||(2577996-2578052)
chr8 (235-331)||(38585112-38585208)
chr8 (235-290)||(29543677-29543732)
chr8 (274-307)||(5686338-5686371)
chr8 (274-331)||(5718471-5718528)
[»] chr3 (9 HSPs)
chr3 (223-335)||(3169268-3169380)
chr3 (239-332)||(2671895-2671988)
chr3 (223-332)||(48897703-48897814)
chr3 (255-326)||(26442957-26443028)
chr3 (223-331)||(1632783-1632892)
chr3 (255-334)||(18271984-18272063)
chr3 (223-334)||(34905820-34905933)
chr3 (234-334)||(45852955-45853055)
chr3 (255-327)||(1714006-1714078)
[»] chr6 (8 HSPs)
chr6 (223-331)||(32871777-32871887)
chr6 (223-334)||(6784723-6784836)
chr6 (240-327)||(6519233-6519320)
chr6 (235-334)||(2130513-2130612)
chr6 (235-334)||(34713489-34713588)
chr6 (235-331)||(28867173-28867269)
chr6 (40-87)||(5964272-5964319)
chr6 (223-290)||(11301810-11301879)
[»] chr1 (14 HSPs)
chr1 (223-334)||(35413000-35413113)
chr1 (239-331)||(43537169-43537261)
chr1 (223-334)||(23906627-23906740)
chr1 (225-334)||(29657340-29657451)
chr1 (235-334)||(21540062-21540161)
chr1 (255-307)||(1062836-1062888)
chr1 (235-331)||(10061580-10061676)
chr1 (235-307)||(47996665-47996737)
chr1 (235-334)||(35149685-35149784)
chr1 (223-303)||(49313581-49313663)
chr1 (255-307)||(13085089-13085141)
chr1 (235-334)||(26469932-26470031)
chr1 (49-88)||(49519832-49519871)
chr1 (273-327)||(11470050-11470104)
[»] chr4 (19 HSPs)
chr4 (223-334)||(19482492-19482605)
chr4 (250-334)||(42504215-42504299)
chr4 (240-327)||(25817658-25817745)
chr4 (235-332)||(41485725-41485822)
chr4 (250-326)||(5288525-5288601)
chr4 (239-331)||(24060568-24060660)
chr4 (251-331)||(30220705-30220783)
chr4 (235-334)||(2765389-2765488)
chr4 (255-410)||(35364655-35364800)
chr4 (223-303)||(16528537-16528619)
chr4 (239-290)||(42108751-42108802)
chr4 (255-334)||(29065299-29065378)
chr4 (57-91)||(7048653-7048687)
chr4 (237-283)||(33883121-33883167)
chr4 (273-331)||(37762833-37762891)
chr4 (40-90)||(47442291-47442341)
chr4 (143-184)||(51117665-51117706)
chr4 (223-290)||(13218430-13218498)
chr4 (274-326)||(51304328-51304380)
[»] chr7 (12 HSPs)
chr7 (223-331)||(21882793-21882903)
chr7 (250-334)||(22631483-22631567)
chr7 (225-331)||(46297589-46297697)
chr7 (235-334)||(23730526-23730623)
chr7 (225-335)||(20125566-20125678)
chr7 (269-331)||(1985028-1985090)
chr7 (235-332)||(24250477-24250574)
chr7 (235-334)||(19511398-19511497)
chr7 (225-334)||(23611771-23611881)
chr7 (255-334)||(46413764-46413846)
chr7 (255-290)||(15127639-15127674)
chr7 (223-290)||(8123665-8123734)
[»] chr2 (16 HSPs)
chr2 (223-334)||(37714397-37714510)
chr2 (235-331)||(27407410-27407506)
chr2 (235-334)||(20142956-20143055)
chr2 (223-303)||(37899555-37899637)
chr2 (221-303)||(32976074-32976158)
chr2 (235-303)||(24183959-24184027)
chr2 (235-331)||(38320224-38320320)
chr2 (223-334)||(13716731-13716844)
chr2 (250-307)||(4434300-4434357)
chr2 (234-331)||(35457388-35457484)
chr2 (273-331)||(14131182-14131240)
chr2 (274-332)||(19945747-19945805)
chr2 (260-333)||(2895399-2895472)
chr2 (40-92)||(19525358-19525410)
chr2 (258-334)||(3167907-3167983)
chr2 (255-331)||(27007177-27007253)
[»] chr5 (11 HSPs)
chr5 (223-331)||(25493793-25493903)
chr5 (235-332)||(35875762-35875859)
chr5 (235-332)||(21259206-21259302)
chr5 (225-334)||(30700891-30701000)
chr5 (235-334)||(3040281-3040380)
chr5 (223-333)||(30071745-30071857)
chr5 (223-307)||(30735369-30735455)
chr5 (235-334)||(20359899-20360000)
chr5 (274-332)||(34280129-34280187)
chr5 (40-89)||(39646458-39646507)
chr5 (40-96)||(37326275-37326331)
[»] scaffold0122 (1 HSPs)
scaffold0122 (223-331)||(18608-18718)
[»] scaffold0194 (1 HSPs)
scaffold0194 (284-334)||(27130-27180)


Alignment Details
Target: scaffold0018 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Complemental strand, 70275 - 69784
Alignment:
Q  19 aaccatgcacttctcttggaaattttatttatgatttgaatcttgaattattttgagattagtagatgatatagtagccaatatatgtattggtaatgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  70275 aaccatgcacttctcttggaaattttatttatgatttgaatcttgaattattttgagattagtagatgatatagtagccaatatatgtattggtaatgca 70176  T
Q  119 tcttataaatcataacaagatttaattcacaattcggaaagtaggtcttctgattcatgatttgaagacatctacattaatcaaacaa------------ 206  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  70175 tcttacaaatcataacaagatttaattcacaattcggaaagtaggtcttctgattcatgatttgaagacatctacattaatcaaacaacattaataggta 70076  T
Q  207 taaaggtctagaataatgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaag 304  Q
    ||||||||||||| |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  70075 taaaggtctagaacaatgttatttatctagagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaag 69976  T
Q  305 ggaaataatggggtgtaattaaggaaaggtaaggaaaggtgttgaggaattataccatcgggata-ttttcgtgataattttctcgctgcatctatcaat 403  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  69975 ggagataatggggtgtaattaaggaaaggtaaggaaaggtgttgaggaattataccatcgggatatttttcgtgataattttctcgctgcatctatcaat 69876  T
Q  404 ttccaaaggtctaactacaagaatgtgggtagtgcgctcacctatgtggtccaccgcgtggaataggaatttcggtccgcctttgcttctcc 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||    
T  69875 ttccaaaggtctaactacaagaatgtgggtagtgcgctcacctatgcggtccaccgcgtggaataggaatttcggtccgccattgtttctcc 69784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 29414358 - 29414469
Alignment:
Q  223 tgctatttatctagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaa 322  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||| ||||||||| |  |||||| || |||    
T  29414358 tgctatttatctagagtttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatggtgtttaa 29414457  T
Q  323 ttaaggaaaggt 334  Q
    ||||||||||||    
T  29414458 ttaaggaaaggt 29414469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 35393714 - 35393823
Alignment:
Q  223 tgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||  |||||||| | ||||||||||||||  |||| |||||||| |||||  ||||| ||| |||||||||||  |||||||||||    
T  35393714 tgctatttatctagagagtttttatcaagaattgatcaagaaagagtttaagccaattgaatttcatattgaccgaaaatcaagggaggtaatggggtgt 35393813  T
Q  321 aattaaggaa 330  Q
    ||||||||||    
T  35393814 aattaaggaa 35393823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 24068250 - 24068140
Alignment:
Q  223 tgctatttatctagagt--ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||   ||||||| | |||||||| |||||| || |||||||||||||||||||||| |||  ||||||| |||  | |||| ||||    
T  24068250 tgctatttatctagagagattttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttgcc-aaaatcaaaggaggtgatggtgtgt 24068152  T
Q  321 aattaaggaaag 332  Q
    ||||||||||||    
T  24068151 aattaaggaaag 24068140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 26415560 - 26415640
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggta 335  Q
    ||||||||||||| ||| |||||||||||| ||||| | ||||||| ||  || ||||||  |||||||||||||||||||    
T  26415560 atcaagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaaggta 26415640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 2577996 - 2578052
Alignment:
Q  40 attttatttatgatttgaatcttgaattattttgagattagtagatgatatagtagc 96  Q
    |||| |||||||| || |||||| ||||||||||||| |||||||||||||| ||||    
T  2577996 atttgatttatgactttaatcttcaattattttgagactagtagatgatatattagc 2578052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 331
Target Start/End: Complemental strand, 38585208 - 38585112
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    |||||||||||| | |||| |||||||||| ||||||   |||||||||||| ||| | |||||||||| |||  |||| | |||||||||| ||||    
T  38585208 agagtttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaattgtgtgtaattaaagaaa 38585112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 29543732 - 29543677
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttatt 290  Q
    |||||||||||| |||||| ||||||||||  | ||| ||||||||||||||||||    
T  29543732 agagtttttatcaaaaatttatcaagaaaatatctcaaccaattaaatttgttatt 29543677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 5686371 - 5686338
Alignment:
Q  274 caattaaatttgttattggccggaaatcaaggga 307  Q
    ||||||||||||||||| ||||||||||||||||    
T  5686371 caattaaatttgttatttgccggaaatcaaggga 5686338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 5718528 - 5718471
Alignment:
Q  274 caattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    ||||||||||| ||||| | |||||||||||| |  |||||| |||||||||||||||    
T  5718528 caattaaatttattatttgtcggaaatcaaggaaggtaatggtgtgtaattaaggaaa 5718471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 3169380 - 3169268
Alignment:
Q  223 tgctatttatctagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaa 322  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||  |   ||||||||||||||||   ||||| |||||||    
T  3169380 tgctatttatctagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaatttcatgaaggccggaaatcaagggcggtaatgaggtgtaa 3169281  T
Q  323 ttaaggaaaggta 335  Q
    |||||||||||||    
T  3169280 ttaaggaaaggta 3169268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 239 - 332
Target Start/End: Original strand, 2671895 - 2671988
Alignment:
Q  239 tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaag 332  Q
    |||||||| | |||||||||||||||||| ||||||||||||||||||||||||| | ||||||  ||| ||||||  ||||||||||||||||    
T  2671895 tttttatcaagaattgatcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaag 2671988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 48897814 - 48897703
Alignment:
Q  223 tgctatttatctagagt--ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||   ||||||| | |||| ||||| |||| |||||||| | |||||||||||||| | || ||||||| ||||||||||| ||||    
T  48897814 tgctatttatctagagagattttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaataatggtgtgt 48897715  T
Q  321 aattaaggaaag 332  Q
    ||||||| ||||    
T  48897714 aattaagaaaag 48897703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 26442957 - 26443028
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaa 326  Q
    ||||||||||||| ||| |||||||||||||||||| | ||||||||||||||  |||||| ||||||||||    
T  26442957 atcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaa 26443028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 331
Target Start/End: Original strand, 1632783 - 1632892
Alignment:
Q  223 tgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||  |||||||| |||||| |||||||||| || ||| | ||||||||||||||||   |||||||||| |||  |||||| ||||    
T  1632783 tgctatttatctagagaatttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaatggtgtgt 1632881  T
Q  321 aattaaggaaa 331  Q
    |||||| ||||    
T  1632882 aattaaagaaa 1632892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 18272063 - 18271984
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    ||||||||||  | ||| |||||||||||||||||| | |||||||||| |||  |||||| |||||||||| |||||||    
T  18272063 atcaagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaaggt 18271984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 34905820 - 34905933
Alignment:
Q  223 tgctatttatctaga--gtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    |||||||||||||||  | ||||||| | ||||||| ||||||| || ||||||| |||||||||||||| | |  ||||||| |||  |||||  || |    
T  34905820 tgctatttatctagatagattttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatgatgtat 34905919  T
Q  321 aattaaggaaaggt 334  Q
    ||||||||||||||    
T  34905920 aattaaggaaaggt 34905933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 334
Target Start/End: Complemental strand, 45853055 - 45852955
Alignment:
Q  234 tagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaagg 333  Q
    ||||| ||||||| | |||| |||||||||| || ||| |||||||||||| ||||| ||  | |||||||||| ||||||   |||||||||| |||||    
T  45853055 tagagattttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttgcttgcaatcaagggagataatgatatgtaattaagaaaagg 45852956  T
Q  334 t 334  Q
    |    
T  45852955 t 45852955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 1714078 - 1714006
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaag 327  Q
    ||||||||||  |||||  ||||||||||||||||| | ||||||| |||||| ||||| | || ||||||||    
T  1714078 atcaagaaaatatttcaatcaattaaatttgttatttggcggaaattaagggagataattgtgtataattaag 1714006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 331
Target Start/End: Complemental strand, 32871887 - 32871777
Alignment:
Q  223 tgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||  |||||||| | |||| ||||||||||||||||| |||||||||||||||||| | ||||||||||||||  |||| | ||||    
T  32871887 tgctatttatctagagagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgt 32871788  T
Q  321 aattaaggaaa 331  Q
    |||||||||||    
T  32871787 aattaaggaaa 32871777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 6784836 - 6784723
Alignment:
Q  223 tgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||  |||||||| | |||| ||||| ||||| | |||||||||||||||||||||| | |||||||||||||| ||||||| ||||    
T  6784836 tgctatttatctagagagtttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgtgt 6784737  T
Q  321 aattaaggaaaggt 334  Q
    ||||||| ||||||    
T  6784736 aattaagaaaaggt 6784723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 6519233 - 6519320
Alignment:
Q  240 ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaag 327  Q
    ||||||| ||||||||||||||||| || |||| ||||||||||||||||| |||| ||||||| |||  |||||  |||||||||||    
T  6519233 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaag 6519320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 2130612 - 2130513
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||| ||  |||||| ||||||||||  | ||| |||||||||||||||||| | |||||||||| |||  | || | ||||||||||||||||||    
T  2130612 agagttttaataaaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgattgtgtgtaattaaggaaaggt 2130513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 34713489 - 34713588
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||||| | |||| |||||||||  || ||| | |||||||||||||||| | || |||||||||||  |||||| ||||| ||||| ||||||    
T  34713489 agagtttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaatggtgtgtatttaagaaaaggt 34713588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 331
Target Start/End: Original strand, 28867173 - 28867269
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    |||| ||||||| | ||||||| ||||||| ||||||  ||||||||||||||||| |  ||||||||| |||  |||| |  ||||||||||||||    
T  28867173 agagattttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaatagtatgtaattaaggaaa 28867269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 5964319 - 5964272
Alignment:
Q  40 attttatttatgatttgaatcttgaattattttgagattagtagatga 87  Q
    |||| |||||||| |||||||||  |||||||||||||||||||||||    
T  5964319 atttgatttatgagttgaatcttacattattttgagattagtagatga 5964272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 11301810 - 11301879
Alignment:
Q  223 tgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttatt 290  Q
    |||||||||| |||||  |||||||| | ||||||||| |||||||| |||| ||||| |||||||||||    
T  11301810 tgctatttatatagagaatttttatcaagaattgatcatgaaaaggtctcagtcaattgaatttgttatt 11301879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 35413000 - 35413113
Alignment:
Q  223 tgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||  |||||||| | |||| ||||||||||||| ||| |||||||||||||||||| | ||||||||||||||  |||| | ||||    
T  35413000 tgctatttatctagagagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgt 35413099  T
Q  321 aattaaggaaaggt 334  Q
    ||||||||||||||    
T  35413100 aattaaggaaaggt 35413113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 43537261 - 43537169
Alignment:
Q  239 tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    |||||||| | |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||  |||||| |||||||||| ||||    
T  43537261 tttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaagaaa 43537169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 23906740 - 23906627
Alignment:
Q  223 tgctatttatctaga--gtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    |||||||||||||||  | ||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||  |||||||| ||  |||||| ||||    
T  23906740 tgctatttatctagaaaggttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaatggtgtgt 23906641  T
Q  321 aattaaggaaaggt 334  Q
    |||||| |||||||    
T  23906640 aattaaagaaaggt 23906627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 29657340 - 29657451
Alignment:
Q  225 ctatttatctagagt--ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaa 322  Q
    ||||||||||||||   ||||||| ||||||| |||||||||||| ||| |||||||||||||||||| |||| ||||||| |||  |||||   |||||    
T  29657340 ctatttatctagagagattttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaatgatatgtaa 29657439  T
Q  323 ttaaggaaaggt 334  Q
    ||||||||||||    
T  29657440 ttaaggaaaggt 29657451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 21540062 - 21540161
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||||| | || | |||||||||| || |||||||||||||||||||||| | ||||||| |||||| ||||||  |||||||||| |||||||    
T  21540062 agagtttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataatgaagtgtaattaaagaaaggt 21540161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 1062836 - 1062888
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaaggga 307  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||| ||||    
T  1062836 atcaagaaaatgtttcagccaattaaatttgttattggccgaaaatcatggga 1062888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 331
Target Start/End: Original strand, 10061580 - 10061676
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    |||||||||||| | |||| ||||| |||| || ||| |||||||||||||||||| | | ||||||||||||  |||||  |||||||||||||||    
T  10061580 agagtttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaattaaggaaa 10061676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 47996665 - 47996737
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaaggga 307  Q
    ||||||||||||  ||||||||| | |||| ||||||| ||||||||||| |||||||| |||||| ||||||    
T  47996665 agagtttttatccgaaattgatccaaaaaatgtttcagtcaattaaatttcttattggctggaaattaaggga 47996737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 35149784 - 35149685
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||||| | |||| ||||||||||  | | | |||||||||||||||||| | |  ||||||||||| ||||||  || |||||||||||||||    
T  35149784 agagtttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataattaaggaaaggt 35149685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 49313581 - 49313663
Alignment:
Q  223 tgctatttatc--tagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaa 303  Q
    |||||||||||  ||||||||||||| | ||||||||||||||| || |||   |||||||||||||||| | ||||||||||    
T  49313581 tgctatttatccatagagtttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttattagtcggaaatcaa 49313663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 13085141 - 13085089
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaaggga 307  Q
    ||||||||||  | |||| ||||||||||||||||| ||||||||||||||||    
T  13085141 atcaagaaaatatctcagtcaattaaatttgttatttgccggaaatcaaggga 13085089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 26469932 - 26470031
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||||| | |||| |||||||||| || ||| | |||||||||| |||||    | ||||||| | | ||||||| ||||||||||||||||||    
T  26469932 agagtttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaaggaaaggt 26470031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 49519871 - 49519832
Alignment:
Q  49 atgatttgaatcttgaattattttgagattagtagatgat 88  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  49519871 atgatttgaatgttgaaatattttgagattagtagatgat 49519832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 11470050 - 11470104
Alignment:
Q  273 ccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaag 327  Q
    |||||||||||||||||| | ||||||||||||||  |||||  |||||||||||    
T  11470050 ccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaattaag 11470104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 19482492 - 19482605
Alignment:
Q  223 tgctatttatctagagt-ttttatctaa-aattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||  |||||| ||| |||| ||||||||||  ||||| |||||||||||||||||| | ||||||||||||||| |||||| ||||    
T  19482492 tgctatttatctagagagttttatttaagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgtgt 19482591  T
Q  321 aattaaggaaaggt 334  Q
    ||||||||||||||    
T  19482592 aattaaggaaaggt 19482605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 42504299 - 42504215
Alignment:
Q  250 aattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||  |||||  ||||||||||||||||||    
T  42504299 aattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaattaaggaaaggt 42504215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 25817658 - 25817745
Alignment:
Q  240 ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaag 327  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||||| | ||||||||||| ||  |||||| |||||||||||    
T  25817658 ttttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaattaag 25817745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 41485725 - 41485822
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaag 332  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||||  |  |||| |||||| ||||||  |||||||||||||||||| ||||    
T  41485725 agagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattttctgctggcaggaaattaagggaggtaatggggtgtaattaagaaaag 41485822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 5288525 - 5288601
Alignment:
Q  250 aattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaa 326  Q
    ||||||| ||||||| || |||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||    
T  5288525 aattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaa 5288601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 24060568 - 24060660
Alignment:
Q  239 tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    |||||||| | ||||||||||||||| || | ||| ||||||||||||||||||   |||||||||||| ||||||| |||||||||||||||    
T  24060568 tttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgtgtaattaaggaaa 24060660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 30220705 - 30220783
Alignment:
Q  251 attgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | || ||| |||||||||||||||    
T  30220705 attgatcaagaaaaggtttca-ccaattaattttgttattggccggaaatcaaggg-agtattggtgtgtaattaaggaaa 30220783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 2765488 - 2765389
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||||  | | |||||||||||||||| | ||||||||||||||||||||||||  |||||| |||| ||||||  |||||||||| |||||||    
T  2765488 agagtttttattaagagttgatcaagaaaaggtctaagccaattaaatttgttattggccaaaaatcatgggagataatgatgtgtaattaatgaaaggt 2765389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 410
Target Start/End: Original strand, 35364655 - 35364800
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggtaaggaaaggtgttgaggaat 354  Q
    ||||| ||||||||| | ||||||||||||||||||| | ||||||||||||| | ||| | || ||||||||||||| |          |||||  |||    
T  35364655 atcaaaaaaaggtttgacccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagat----------gttgaataat 35364744  T
Q  355 tataccatcgggatattttcgtgataattttctcgctgcatctatcaatttccaaa 410  Q
    ||||| |||||||||||||||||||| |||||| |||  ||||||||||| |||||    
T  35364745 tatactatcgggatattttcgtgatacttttcttgctagatctatcaattcccaaa 35364800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 16528537 - 16528619
Alignment:
Q  223 tgctatttatctagagt--ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaa 303  Q
    ||||||||||||||||   |||||| || |||||||||| | ||||| |||||||||||||||||||||| | ||||||||||    
T  16528537 tgctatttatctagagagattttatttagaattgatcaatagaaggtctcagccaattaaatttgttatttgtcggaaatcaa 16528619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 42108802 - 42108751
Alignment:
Q  239 tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttatt 290  Q
    |||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  42108802 tttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatt 42108751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 29065378 - 29065299
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||| || |||  ||||||||||||||||| | |||||||||| |||  |||||| |||||||||| |||||||    
T  29065378 atcaagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaaggt 29065299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 7048653 - 7048687
Alignment:
Q  57 aatcttgaattattttgagattagtagatgatata 91  Q
    ||||||||||||||||||| |||||||||||||||    
T  7048653 aatcttgaattattttgaggttagtagatgatata 7048687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 33883121 - 33883167
Alignment:
Q  237 agtttttatctaaaattgatcaagaaaaggtttcagccaattaaatt 283  Q
    |||||||||| | ||||||||||||||| |||| |||||||||||||    
T  33883121 agtttttatcaagaattgatcaagaaaatgtttaagccaattaaatt 33883167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 37762833 - 37762891
Alignment:
Q  273 ccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    |||||||||||||||||| | || || |||| ||||||||||  |||||||||||||||    
T  37762833 ccaattaaatttgttatttgacgaaagtcaaaggaaataatgatgtgtaattaaggaaa 37762891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 47442341 - 47442291
Alignment:
Q  40 attttatttatgatttgaatcttgaattattttgagattagtagatgatat 90  Q
    |||| |||||| | |||||||||||||||||||||| || |||||||||||    
T  47442341 atttgatttattacttgaatcttgaattattttgagctttgtagatgatat 47442291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 51117706 - 51117665
Alignment:
Q  143 attcacaattcggaaagtaggtcttctgattcatgatttgaa 184  Q
    |||||| |||||||||||||||||| ||||||| ||||||||    
T  51117706 attcacgattcggaaagtaggtcttttgattcacgatttgaa 51117665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 13218430 - 13218498
Alignment:
Q  223 tgctatttatct-agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttatt 290  Q
    |||||||||| | |||||||||||  |||||| || |||||||||| || | |||||||||||||||||    
T  13218430 tgctatttatttgagagtttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttatt 13218498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 51304380 - 51304328
Alignment:
Q  274 caattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaa 326  Q
    ||||||||||||||||| | |||||||||| ||| ||||||| ||| ||||||    
T  51304380 caattaaatttgttatttgacggaaatcaaaggagataatggcgtgcaattaa 51304328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 223 - 331
Target Start/End: Complemental strand, 21882903 - 21882793
Alignment:
Q  223 tgctatttatctagagt--ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||   ||||||  | ||||||| |||||||| | |||||||||||||||||||||| ||||||||||||||||  |||||| ||||    
T  21882903 tgctatttatctagagagattttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgt 21882804  T
Q  321 aattaaggaaa 331  Q
    |||||||||||    
T  21882803 aattaaggaaa 21882793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 22631483 - 22631567
Alignment:
Q  250 aattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||||||||| | |||||||||||||||||||||| | |||||||||| ||| ||||| | ||||||||||||||||||    
T  22631483 aattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaaggt 22631567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 225 - 331
Target Start/End: Original strand, 46297589 - 46297697
Alignment:
Q  225 ctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaa 322  Q
    ||||||||||||||  |||||||| | |||| |||||||||| || ||||||| || ||||||||||| | || |||||||||||  |||||| ||||||    
T  46297589 ctatttatctagagagtttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaatggtgtgtaa 46297688  T
Q  323 ttaaggaaa 331  Q
    |||||||||    
T  46297689 ttaaggaaa 46297697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 23730623 - 23730526
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||| ||||||| | ||||||||||||||| |||||||| ||||||||| |||||| | ||||||||||| ||  ||||  |||||||||||||||||||    
T  23730623 agagattttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaat--ggtgtaattaaggaaaggt 23730526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 20125566 - 20125678
Alignment:
Q  225 ctatttatctagagt--ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaa 322  Q
    ||||||||||||||   ||||||| | ||||||||||||||| || |||||||||||||||||||| | | | ||||| || | | ||||||| ||||||    
T  20125566 ctatttatctagagaggttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataatggtgtgtaa 20125665  T
Q  323 ttaaggaaaggta 335  Q
    |||| ||||||||    
T  20125666 ttaaagaaaggta 20125678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 1985028 - 1985090
Alignment:
Q  269 tcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    |||||||||||||||||||||| |||||||||||||| |  ||||||  ||||||||||||||    
T  1985028 tcagccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaa 1985090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 24250574 - 24250477
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaag 332  Q
    |||| ||||||| | |||||||||||||||| | | | |||||| ||||||||||| | ||||||||||||||  ||||||  |||||||||| ||||    
T  24250574 agagattttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaatggtttgtaattaagaaaag 24250477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 19511398 - 19511497
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||| ||||||| | ||||||| ||||||| |||| |||||||||||||| |||||    ||||||||| ||| ||||| | | ||||||||||||||||    
T  19511398 agagattttatcaagaattgattaagaaaaagttttagccaattaaatttattattttttggaaatcaatggagataatagtgagtaattaaggaaaggt 19511497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 23611881 - 23611771
Alignment:
Q  225 ctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaa 322  Q
    ||||||||||||||  |||||||  | |||| |||||||||| || ||| | |||||||||||||||| | ||||||||||| ||  |||| || |||||    
T  23611881 ctatttatctagagagtttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaagagaggtaat-ggatgtaa 23611783  T
Q  323 ttaaggaaaggt 334  Q
    ||||| ||||||    
T  23611782 ttaagtaaaggt 23611771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 46413846 - 46413764
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttattggc---cggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||| || ||| |||||||||||||||||| |    ||||||||||||||  |||||  ||||||||||||||||||    
T  46413846 atcaagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggt 46413764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 290
Target Start/End: Complemental strand, 15127674 - 15127639
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttatt 290  Q
    ||||||||||||||||||| ||||||||||||||||    
T  15127674 atcaagaaaaggtttcagcaaattaaatttgttatt 15127639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 8123665 - 8123734
Alignment:
Q  223 tgctatttatctagagt--ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttatt 290  Q
    ||||||||||||||||   |||||||   ||||||||||||||| || |||| |||||||||||||||||    
T  8123665 tgctatttatctagagagattttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatt 8123734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 37714397 - 37714510
Alignment:
Q  223 tgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||  |||||||| |  ||| ||||||||||||| ||| |||||||||||||||||| |  ||||||||| ||| ||||||| ||||    
T  37714397 tgctatttatctagagagtttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgt 37714496  T
Q  321 aattaaggaaaggt 334  Q
    ||||||||||||||    
T  37714497 aattaaggaaaggt 37714510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 331
Target Start/End: Original strand, 27407410 - 27407506
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    ||||| |||||| | |||||||||||||||| | ||||||||||||||||||||||  ||||||||||||| | ||||||  |||||||||||||||    
T  27407410 agagtgtttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaa 27407506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 20142956 - 20143055
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||||| | |||| |||||||||| || ||| |||||||||||| ||||| | |||||||||||| |  |||||  ||||||||||||||||||    
T  20142956 agagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatgatgtgtaattaaggaaaggt 20143055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 37899637 - 37899555
Alignment:
Q  223 tgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaa 303  Q
    ||||||||||||||||  |||||||| |||||| ||||||||||||||||| |||||||||||||| ||| | || |||||||    
T  37899637 tgctatttatctagagagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaa 37899555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 303
Target Start/End: Complemental strand, 32976158 - 32976074
Alignment:
Q  221 aatgctatttatctagagt--ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaa 303  Q
    ||||||||||||||||||   ||||||| | ||||||||||||||| || ||| |||||||||||||||||| | ||||||||||    
T  32976158 aatgctatttatctagagagattttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaa 32976074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 24183959 - 24184027
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaa 303  Q
    |||||||||||  | |||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  24183959 agagtttttattcataatttatcaagaaaaggtttcagccaattaaatttattatttgccggaactcaa 24184027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 331
Target Start/End: Complemental strand, 38320320 - 38320224
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    |||||||||||| | |||| ||||||||||| ||||| |||||||||||||||||| |  ||||||||| |||  |||||  |||||| ||||||||    
T  38320320 agagtttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatgatgtgtaaataaggaaa 38320224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 13716844 - 13716731
Alignment:
Q  223 tgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||  |||||||| | |||| |||||||||| || ||| |||||||||||||| ||| | || ||||||| |||  |||| | ||||    
T  13716844 tgctatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaatagtgtgt 13716745  T
Q  321 aattaaggaaaggt 334  Q
    ||||||| ||||||    
T  13716744 aattaagaaaaggt 13716731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 4434300 - 4434357
Alignment:
Q  250 aattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaaggga 307  Q
    ||||||||||||||||||  ||| ||||||||||||||||| |||| |||||||||||    
T  4434300 aattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaaggga 4434357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 35457388 - 35457484
Alignment:
Q  234 tagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    ||||||||||||| | |||| || ||||||||||||||  ||||||||||| |||||   |||||||||| |||  |||||| |||||||||||||||    
T  35457388 tagagtttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaattaaggaaa 35457484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 14131182 - 14131240
Alignment:
Q  273 ccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    |||||||||| ||||||| | ||||||||||| || ||||||| |||||||||||||||    
T  14131182 ccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaaggaaa 14131240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 19945805 - 19945747
Alignment:
Q  274 caattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaag 332  Q
    ||||||||||||||||| | ||||||| ||||||  |||||| ||||||||||||||||    
T  19945805 caattaaatttgttatttgacggaaattaagggaggtaatggtgtgtaattaaggaaag 19945747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 2895472 - 2895399
Alignment:
Q  260 gaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaagg 333  Q
    |||||||||||||| ||  |||||| |||||||||  ||||||||||| |||||| | | ||||||||||||||    
T  2895472 gaaaaggtttcagcgaacgaaatttcttattggccataaatcaagggagataatgagatataattaaggaaagg 2895399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 19525410 - 19525358
Alignment:
Q  40 attttatttatgatttgaatcttgaattattttgagattagtagatgatatag 92  Q
    |||| |||||||| | |||||||||||||||||||||||||| ||| ||||||    
T  19525410 atttgatttatgactcgaatcttgaattattttgagattagttgattatatag 19525358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 3167907 - 3167983
Alignment:
Q  258 aagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||| ||| |||||||||||| ||||| | |||||||||| | |  |||||  |||||||||| |||||||    
T  3167907 aagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgtgtaattaaagaaaggt 3167983  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 27007177 - 27007253
Alignment:
Q  255 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaa 331  Q
    |||||||||  || ||| |||| ||||||||||||| | ||||||||||||||  |||| | ||||| |||||||||    
T  27007177 atcaagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaa 27007253  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 331
Target Start/End: Original strand, 25493793 - 25493903
Alignment:
Q  223 tgctatttatctagag--tttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    ||||||||||||||||  |||||||| | ||||||||||||||| || ||||||||||||||||||| || | | |||||||| |||  |||||| ||||    
T  25493793 tgctatttatctagagagtttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaatggtgtgt 25493892  T
Q  321 aattaaggaaa 331  Q
    |||||||||||    
T  25493893 aattaaggaaa 25493903  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 35875859 - 35875762
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaag 332  Q
    |||| ||||||| | ||||||||||| |||||||| ||||||||||||||  | ||||||| |||| |||||| |||||| |||||||||||||||||    
T  35875859 agagattttatcaagaattgatcaaggaaaggtttaagccaattaaatttcatgttggccgaaaattaagggagataatgaggtgtaattaaggaaag 35875762  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 21259206 - 21259302
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaag 332  Q
    |||||||||||| | ||||||| |||||||||||| ||| ||||||||||  |  ||| ||||||||||||||  |||| ||||||||||||||||||    
T  21259206 agagtttttatcaagaattgataaagaaaaggtttaagctaattaaatttcatgctggacggaaatcaagggaggtaat-gggtgtaattaaggaaag 21259302  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 30701000 - 30700891
Alignment:
Q  225 ctatttatctagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaatt 324  Q
    |||||||||||||||||||||| |||||  || ||||||| || |||  ||||||||||||||||| | || |||| ||||||  |||||  ||||||||    
T  30701000 ctatttatctagagtttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgttgtgtaatt 30700901  T
Q  325 aaggaaaggt 334  Q
    ||| ||||||    
T  30700900 aagaaaaggt 30700891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 3040380 - 3040281
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    |||||||||||| | |||| |||||||||| || |||  ||||||||||||||||  |  | |||||||||||  |||||| ||||||||||||||||||    
T  3040380 agagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatggtgtgtaattaaggaaaggt 3040281  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 30071745 - 30071857
Alignment:
Q  223 tgctatttatcta--gagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    |||||||||||||  ||||||||||||| |||| | ||||||||||| ||| |||||||||||| ||||| |  |||||||| || |  || ||| ||||    
T  30071745 tgctatttatctaaagagtttttatctagaatttaacaagaaaaggtctcaaccaattaaatttattatttgttggaaatcatggaaggtagtggtgtgt 30071844  T
Q  321 aattaaggaaagg 333  Q
    |||| ||||||||    
T  30071845 aattgaggaaagg 30071857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 30735455 - 30735369
Alignment:
Q  223 tgctatttatctaga--gtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaaggga 307  Q
    |||||||||||||||  ||||||||  | |||  |||||||||| || |||  ||||||||||||||||| | ||||||||||||||    
T  30735455 tgctatttatctagatagtttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaaggga 30735369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 20359899 - 20360000
Alignment:
Q  235 agagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgtt--attggccggaaatcaagggaaataatggggtgtaattaaggaaag 332  Q
    |||| ||||||| | ||||||||||||||| || || | ||||||||| ||||  |||  || |||||||| ||| ||||||| |||||||||| |||||    
T  20359899 agagattttatcaagaattgatcaagaaaatgtctcggtcaattaaatctgttaaattttcctgaaatcaaaggagataatggtgtgtaattaaagaaag 20359998  T
Q  333 gt 334  Q
    ||    
T  20359999 gt 20360000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 34280187 - 34280129
Alignment:
Q  274 caattaaatttgttattggccggaaatcaagggaaataatggggtgtaattaaggaaag 332  Q
    ||||||||||||||||| | ||||||| |||| | |||||||  |||||||||||||||    
T  34280187 caattaaatttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaag 34280129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 39646458 - 39646507
Alignment:
Q  40 attttatttatgatttgaatcttgaattattttgagattagtagatgata 89  Q
    |||| ||||| || || |||||||||| ||||||||||||||||||||||    
T  39646458 atttgatttaagacttcaatcttgaatcattttgagattagtagatgata 39646507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 37326275 - 37326331
Alignment:
Q  40 attttatttatgatttgaatcttgaattattttgagattagtagatgatatagtagc 96  Q
    |||| |||||||||||||||||||||| |||||||  || ||| |||||||| ||||    
T  37326275 atttgatttatgatttgaatcttgaatcattttgatgttcgtatatgatatattagc 37326331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 331
Target Start/End: Original strand, 18608 - 18718
Alignment:
Q  223 tgctatttatcta--gagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggaaataatggggtgt 320  Q
    |||||||||||||  ||| ||||||  | ||||||||||||||| || | || ||||||||||||||||| | || |||| |||||| ||||||| | ||    
T  18608 tgctatttatctaaagagattttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttgtcgaaaattaagggagataatggtgagt 18707  T
Q  321 aattaaggaaa 331  Q
    |||||||||||    
T  18708 aattaaggaaa 18718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 27180 - 27130
Alignment:
Q  284 tgttattggccggaaatcaagggaaataatggggtgtaattaaggaaaggt 334  Q
    ||||||| | |||||||||||||| ||||| | ||||||||||||||||||    
T  27180 tgttatttggcggaaatcaagggagataatagagtgtaattaaggaaaggt 27130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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