View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12795_low_11 (Length: 274)
Name: NF12795_low_11
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 264
Target Start/End: Complemental strand, 40765787 - 40765527
Alignment:
| Q |
3 |
ttcaggccagtggcaaaaagaatcatcctttcaaagccaagaccgaatccagcatgtttcaccgttccataccgcctaaggtcaatgtaccattcatatg |
102 |
Q |
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| T |
40765787 |
ttcaggccagtggcaaaaagaatcatcctttcaaagccaagaccgaatccagcatgtttcaccgttccataccgcctaaggtcaatgtaccattcatatg |
40765688 |
T |
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| Q |
103 |
gctcaacaggcaaatccatctcctttagtctgtaacattataacaatagaaacaaggaaaataaagtnnnnnnntccttaacgagagcacatttatttat |
202 |
Q |
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| T |
40765687 |
gctcaacaggcaaatccatctcctttagtctgtaacattataacaatagaaacaaggaaaataaag-caaagaatccttaacaagagcacatttatttat |
40765589 |
T |
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| Q |
203 |
gaatcaggataagcagaaattataatttacctttgttgaatgacatcataacgctcctccct |
264 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40765588 |
gaatcaggataagcggaaattataatttacctttgttgaatgacatcataacgctcctccct |
40765527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 42914463 - 42914323
Alignment:
| Q |
5 |
caggccagtggcaaaaagaatcatcctttcaaagccaagaccgaatccagcatgtttcaccgttccataccgcctaaggtcaatgtaccattcatatggc |
104 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |
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| T |
42914463 |
caggccagtagcaaaaagaatcatcctttcaaagccaagaccgaatccagcatgtttcactgttccataccgcctcagatcaatgtaccattcatatggc |
42914364 |
T |
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| Q |
105 |
tcaacaggcaaatccatctcctttagtctgtaacattataa |
145 |
Q |
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| T |
42914363 |
tcaacaggcagatccatctcctctagtctgtaacattataa |
42914323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 42914256 - 42914178
Alignment:
| Q |
186 |
agagcacatttatttatgaatcaggataagcagaaattataatttacctttgttgaatgacatcataacgctcctccct |
264 |
Q |
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|||||| ||||||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42914256 |
agagcaaatttatttaagaattagggtaagcggaaattataatttacctttgttgaatgacatcataacgctcctccct |
42914178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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