View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12795_low_12 (Length: 270)
Name: NF12795_low_12
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 15454728 - 15454849
Alignment:
| Q |
132 |
atggttgtttgttaaggtttttaatgtcaaattaaagccacctatgaaattaagaaagatgtatgtaccttgaaatcatccatttcagaaggtgaaactg |
231 |
Q |
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| T |
15454728 |
atggttgtttgttaaggtttttaatgtcaaattaaagccacctatgaaattaagaaagatgtatgtaccttgaaatcatccatttcagaaggtgaaactg |
15454827 |
T |
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| Q |
232 |
gtggactatctgttaaagatcc |
253 |
Q |
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| T |
15454828 |
gtggactatctgttaaagatcc |
15454849 |
T |
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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 15454611 - 15454687
Alignment:
| Q |
15 |
cagagaaagctgaaattggtactagtggtttctaactgtacactgtacagtgagatcagtgtttcgtgctttgtacc |
91 |
Q |
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| T |
15454611 |
cagagaaagctgaaattggtactagtggtttctaactgtacactgtacagtgagatcagtgtttcgtgctttgtacc |
15454687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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