View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12795_low_13 (Length: 258)
Name: NF12795_low_13
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 30771975 - 30771814
Alignment:
| Q |
17 |
ctttcaccttttttgagtcaaaacctatggccgagctatatagtgttaatgccaaattggtcttgtgtcaatattaatgagcatttaaggtttatttaaa |
116 |
Q |
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| T |
30771975 |
ctttcaccttttttgagtcaaaacctatggccgacatatatagtgttaatgccaaattggtcttgtgtcaatattaatgagcatttaaggtttatttaaa |
30771876 |
T |
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| Q |
117 |
agcgtgagatgtgannnnnnnaagttgaaggtcctagtgaactcagatgatagaaacaatat |
178 |
Q |
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| T |
30771875 |
agcgtgagatgtgatttttttaagttgaaggttctagtgaactcagattataggaataatat |
30771814 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 30771530 - 30771466
Alignment:
| Q |
182 |
gtaataaatatgggtcgagattcaaacctcaaattcctcacttattcatatgtaaggtgtattct |
246 |
Q |
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| T |
30771530 |
gtaataagtatgggtcgaggttcaaacctcaaattcctcacttattcatatttaaggtgtattct |
30771466 |
T |
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