View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12795_low_17 (Length: 217)
Name: NF12795_low_17
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30229827 - 30229622
Alignment:
| Q |
1 |
gtaaaaggggaaaaccagttcagtaaaatcaaacaacatatatataagaatgcaagtctaacaagcttaggttgtaccaatgaaatagttcaaaatgaaa |
100 |
Q |
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| T |
30229827 |
gtaaaaggggaaaaccagttcagtaaaatcaaacaacatatatataagaatgcaagtctaacaagcttaggttgtaccaatgaaatagttcaaaatgaaa |
30229728 |
T |
|
| Q |
101 |
gattgaactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaatttacgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
30229727 |
gattgaactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaactgtgtgaataaacttttggcaatttacatg |
30229628 |
T |
|
| Q |
201 |
aacgag |
206 |
Q |
| |
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||||| |
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| T |
30229627 |
tacgag |
30229622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 35 - 192
Target Start/End: Complemental strand, 30232527 - 30232361
Alignment:
| Q |
35 |
aacatatatataagaatgcaagtctaacaagcttaggttgtaccaatgaaatagttcaaaa-------tgaaagat--tgaactaacagagattatcaca |
125 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | || | | | ||||||||||| || ||||| |
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| T |
30232527 |
aacatatacttaagaatgcaagtctaacaagcttaggctgtaccaatgaaatagttcaaaagagcaattcaaggctgataaactaacagaggttttcaca |
30232428 |
T |
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| Q |
126 |
ttatttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaa |
192 |
Q |
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| T |
30232427 |
tcgtttcttaaaaatgttttggtttacttgctctaaaggagaaactgtgtaaataaatttttggcaa |
30232361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 34689462 - 34689399
Alignment:
| Q |
129 |
tttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaa |
192 |
Q |
| |
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||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||| ||||||||| |
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| T |
34689462 |
tttcttaaaaatgttttggtttacttgctcttaaggagaaactgtgtgaataaatttttggcaa |
34689399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 34689536 - 34689485
Alignment:
| Q |
45 |
taagaatgcaagtctaacaagctt-aggttgtaccaatgaaatagttcaaaa |
95 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
34689536 |
taagaatgcaagtctaacaagcttaaggctgtaccaatgaaatagtgcaaaa |
34689485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 26987355 - 26987292
Alignment:
| Q |
129 |
tttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaa |
192 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||| ||||||||| |
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|
| T |
26987355 |
tttcttaaaaatgttttggtttacttgctcttaaggagaaactgtgtgaataaatttttggcaa |
26987292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 27077852 - 27078011
Alignment:
| Q |
48 |
gaatgcaagtctaacaagcttaggttgtaccaatgaaatagttcaaaa-----tgaa---agattgaactaacagagattatcacattatttcttaaaaa |
139 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| |||||||||||||| | || |||| |||||||||||||| |||||| |||| |||||| |
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| T |
27077852 |
gaatgcaagtctaacaagcttaagctgtaccaacgaaatagttcaaaagagcattaaggcagata-aactaacagagattttcacatcgtttcctaaaaa |
27077950 |
T |
|
| Q |
140 |
tg----gtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaatttac |
197 |
Q |
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|| | || |||||||||||||||||||| |||| |||||||||| |||||||||||||| |
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| T |
27077951 |
tgttttggtttgtttacttgctctaaaggag-aactgtgtgaataaatttttggcaatttac |
27078011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 27100241 - 27100306
Alignment:
| Q |
106 |
aactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaact |
171 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||| |||| ||||| |||||||||||||| |
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| T |
27100241 |
aactaacagaaattatcacataatttcttaaaaatgttttggtttgcttgcgctaaaggagaaact |
27100306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 26987429 - 26987378
Alignment:
| Q |
45 |
taagaatgcaagtctaacaagctt-aggttgtaccaatgaaatagttcaaaa |
95 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
26987429 |
taagaatgcaagtctaacaagcttaaggctgtaccaatgaaatagtgcaaaa |
26987378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 27026927 - 27026862
Alignment:
| Q |
106 |
aactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaact |
171 |
Q |
| |
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|||||||| ||| |||||||| |||||| |||||||||| ||||||||||||||||| |||||| |
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| T |
27026927 |
aactaacaaagagtatcacatcctttcttcaaaatggtttgctttacttgctctaaaggtgaaact |
27026862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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