View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12795_low_2 (Length: 465)
Name: NF12795_low_2
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 10 - 434
Target Start/End: Original strand, 32355674 - 32356106
Alignment:
| Q |
10 |
gaagcaaaggagggaagcgttagattaaaataaaaaaggaatcatggtagagttcagttgcaaacatgcacatgtcagtcggtgtgtattgtctacacgc |
109 |
Q |
| |
|
||||||||| ||||||| |||||||||| |||||||||| || ||| |||||||||||||||||||||||||||| || ||||| || ||||||||| |
|
|
| T |
32355674 |
gaagcaaag-agggaagtgttagattaagttaaaaaaggactcgtggaagagttcagttgcaaacatgcacatgtctgtgggtgtatagtgtctacac-- |
32355770 |
T |
|
| Q |
110 |
agaaaagcaagaagctaaagaaccttaacactcactttatttggctaaattgactccctaatctcattgcatttattaacagcttgctcaaccaaattat |
209 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32355771 |
agaaaagcaagaaactaaagaacattggcactcactttatctggctgaattgactcccaaatctcattgcatttattaacagcttgctcaaccaaattat |
32355870 |
T |
|
| Q |
210 |
tatcatcccattgcatgaggtgggcatgcaataatgaagtggtaaaggacatctggttcattnnnnnnnnnnca------acacacagtcagatggtaat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| | ||| || ||||||||| | | |
|
|
| T |
32355871 |
catcatcccattgcatgaggtgggcatgcaataatgaagtggcaaagaacatctggtccattatgataacacaaggaattacagacggtcagatggcatt |
32355970 |
T |
|
| Q |
304 |
attatagcaaactctcgacataattggagtaccatttattttagcaaactagagcattgcacac-----atgcaacatgcgtgaaaagaagtaaaattgt |
398 |
Q |
| |
|
||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
32355971 |
attatagcaaactaaaagcacaactggagtaccctttattttagcaaactagagcattgcacacatgcaatgcaacatgtgtgaaaagtagtaaaattgt |
32356070 |
T |
|
| Q |
399 |
cataatagaagcaggtataaaagatgaaagtgatga |
434 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32356071 |
cataatagaagctggtataaaagatgaaagtgatga |
32356106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 324 - 465
Target Start/End: Original strand, 33580691 - 33580832
Alignment:
| Q |
324 |
taattggagtaccatttattttagcaaactagagcattgcacacatgcaacatgcgtgaaaagaagtaaaattgtcataatagaagcaggtataaaagat |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33580691 |
taattggagtaccatttattttagcaaactagagcattgcacacatgcaacatgagtgaaaagaagtaaaattgtcataatagaagcaggtataaaagat |
33580790 |
T |
|
| Q |
424 |
gaaagtgatgagttaagattaagggaaggaaagaagaaaggg |
465 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33580791 |
gaaagtgatgagttaagaataagggaaggaaagaagaaaggg |
33580832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 42302664 - 42302776
Alignment:
| Q |
153 |
gctaaattgactccctaatctca-ttgcatttattaacagcttgctcaaccaaattattatcatcccattgcatgaggtgggcatgcaataatgaagtgg |
251 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||| ||| ||| || |||||| ||||||| | || |||||||| |||||||| |||||||| |
|
|
| T |
42302664 |
gctaaattgactcccaaatctcatttgcacttattaacaactttctctacaaaattagtatcatctcgttacatgaggtcaaaatgcaatattgaagtgg |
42302763 |
T |
|
| Q |
252 |
taaaggacatctg |
264 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
42302764 |
caaagaacatctg |
42302776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 111 - 264
Target Start/End: Original strand, 17921912 - 17922065
Alignment:
| Q |
111 |
gaaaagcaagaagctaaagaaccttaacactcactttatttggctaaattgactccctaatctcattgcatttattaacagcttgctcaaccaaattatt |
210 |
Q |
| |
|
||||||||||||| ||||||| || ||||||||| || ||| ||||||||||| |||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
17921912 |
gaaaagcaagaagttaaagaatatttgcactcacttgatcaggcagaattgactcccaaatctcattgcatttattaatagcttgagcaaccaaactatt |
17922011 |
T |
|
| Q |
211 |
atcatcccattgcatgaggtgggcatgcaataatgaagtggtaaaggacatctg |
264 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
17922012 |
atcatccgtatgcattaggcaagcatgcaataatgaagtggaaaagaacatctg |
17922065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 17969247 - 17969315
Alignment:
| Q |
387 |
aagtaaaattgtcataatagaagcaggtataaaagatgaaagtgatgagttaagattaagggaaggaaa |
455 |
Q |
| |
|
||||| ||||||| ||||||||| | ||||||||||||||||||| |||| |||| |||| ||||||| |
|
|
| T |
17969247 |
aagtagaattgtcgtaatagaagaacgtataaaagatgaaagtgacgagtaaagaataagataaggaaa |
17969315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 17955594 - 17955692
Alignment:
| Q |
29 |
ttagattaaaataaaaaaggaatcatggtagagttcagttgcaaacatgcacatgtcagtcggtgtgtattgtctacacgcagaaaagcaagaagctaaa |
128 |
Q |
| |
|
|||||||||| |||||| ||||||||||| | ||||||||||||||||||||| || ||||| |||||| ||| | ||||||||||| | |||| |
|
|
| T |
17955594 |
ttagattaaattaaaaacggaatcatggt-----ttagttgcaaacatgcacatgtctgtgggtgtacattgtccacaaacggaaaagcaagatgttaaa |
17955688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 17969054 - 17969103
Alignment:
| Q |
35 |
taaaataaaaaaggaatcatggtagagttcagttgcaaacatgcacatgt |
84 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||| |||||| ||||||| |
|
|
| T |
17969054 |
taaattaaaaaaggaatcatagtagtgttcagttgaaaacatacacatgt |
17969103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University