View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12795_low_3 (Length: 440)
Name: NF12795_low_3
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 40954351 - 40953939
Alignment:
| Q |
18 |
ctctctgtgccgcggcaccggtttctccttccttgattgccatccatgaagtgttggtgacttcatcggtggaaatgaaatctttgtgctgttcttccgt |
117 |
Q |
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| T |
40954351 |
ctctctgtgccgcggcaccggtttctccttccttgattgccatccatgaagtgttggtgacttcatctgtggaaatgaaatctttgtgctgttcttccgt |
40954252 |
T |
|
| Q |
118 |
ttctgtccatgttttcaggtgtgacggagaacgtaccggtgaggttgagttgcttgttggattgaatacttcgagggatcctcgagggtccctcggaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40954251 |
ttctgtccatgttttcaggtgtgacggagaacgtaccggtgaggttgagttgcttgttggattgaatacttcgagggatcctcgagggtccctcggaaat |
40954152 |
T |
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| Q |
218 |
gatggtctttgtgatgaagttgatggtggtttcttcaaacgctccattgtaactagtaactaccttcctgtagtttccacaatgctgtatatataggaat |
317 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40954151 |
gatggtctttgtgatgaagatgatggtgatttcttcaaacgctccattgtaactagtaactaccttcctgtagtttccacaatgctgtatatataggaat |
40954052 |
T |
|
| Q |
318 |
taatattgttacagnnnnnnnggtttaatacattggaccagttggaccaacattttatgttatgttacatcaaataatcacaatatacttgatattgaaa |
417 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40954051 |
taatattgttacagtttttttggtttaatacattggaccagttggaccaacattttatgttatgttacatcaaataatcacaatatacttgatattgaaa |
40953952 |
T |
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| Q |
418 |
aaatttcagtgaa |
430 |
Q |
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| T |
40953951 |
aaatttcagtgaa |
40953939 |
T |
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