View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12795_low_5 (Length: 371)
Name: NF12795_low_5
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 40765782 - 40766133
Alignment:
| Q |
1 |
cctgaaagatattagagatgtgattcccttcccacgatatcctggcggagcagatttatgataattataacttattactaacatagctactataattacc |
100 |
Q |
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| T |
40765782 |
cctgaaaaatattagagatgtgattcccttcccacgatatcctggcagagcagatttatgataactataactgattactaaaatagctactataattccc |
40765881 |
T |
|
| Q |
101 |
ttgctgaagtagagttgaaaacagagaaattgtttccatgtagagcataaatttcagtcttatctcctgggttacactcttctaccaactaatttacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40765882 |
ttgctgaagtagagttgaaaacagagaaattgtttccatgtagagcataaatttcagtcttatctcctgggttacactcttctaccaactaatttacttt |
40765981 |
T |
|
| Q |
201 |
tgagagaatctgggttttgggtggtaaatcctattttatttatttcctcatttgttttatttcattatatagaggattgaaacaacttattataggcgca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
40765982 |
tgagagaatctgggttttgggtggtaaatcctattttatttatttccgcatttgttttatttcattatat--aggattgaaacaacttattataggcaca |
40766079 |
T |
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| Q |
301 |
tgattctaccaactatttataggcacacgattgattcaatgagttgtagttggt |
354 |
Q |
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| T |
40766080 |
tgattctaccaactatttataggcacacgattgattcaatgagttgtagttggt |
40766133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 42914468 - 42914571
Alignment:
| Q |
9 |
atattagagatgtgattcccttcccacgatatcctggcggagcagatttatgataattataacttattactaacatagctactataattaccttgctgaa |
108 |
Q |
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| T |
42914468 |
atattagagatgtgattcccttcccacgatatcctggcagagcagatttatgatttttattactgattactaaaatagctactacaattcccttgctgaa |
42914567 |
T |
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| Q |
109 |
gtag |
112 |
Q |
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|||| |
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| T |
42914568 |
gtag |
42914571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 42914609 - 42914701
Alignment:
| Q |
116 |
tgaaaacagagaaattgtttccatgtagagcataaatttcagtcttatctcctgggttacactcttctaccaactaatttacttttgagagaat |
209 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||| |
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| T |
42914609 |
tgaaaacagaaaaattgtttcgatgtagagcataaatttcagtcttatgtcctggg-tacactcttttaccaactaatttactttcgagagaat |
42914701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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