View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12795_low_6 (Length: 359)
Name: NF12795_low_6
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 30229880 - 30230220
Alignment:
| Q |
9 |
agagagatgaactaattatgcatgcacaatcaaatatcgcagacctcatactaccttttctttggtccattgtataaaaataccgtaaatttatatatat |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30229880 |
agagaaatgaactaattatgcatgcacaatcaaatatcgcacacctcatactaccttttctttggtccattgtataaaaataccgcaaatttatatatat |
30229979 |
T |
|
| Q |
109 |
ggctcttagattatgcaaaatcttttgaaatttttgtgaaaatatgattatgaatcacatacaactttgtcactcttaaaaatgttgcaaccctc----t |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30229980 |
ggctcttagattatgcaaaatcttttgaaatttttgtgaaaatatgattatgaatcacatacaactttgtcactcttaaaaatgttgcaaccctctcttt |
30230079 |
T |
|
| Q |
205 |
ctctctca----ctctatgttaatacttaattgttgcagtatcatctgtgaatgtagatggatgtacgcatcctggatcatttggaggcatttgtataca |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30230080 |
ctctctcactctctctatgttaatacttaattgttgcagtatcatctgtgaatgtagatggatgtacgcatcctggatcatttggaggcatttgtataca |
30230179 |
T |
|
| Q |
301 |
ttgtgggaaaaaggttgatggggaatctggtgtgtcgtttg |
341 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30230180 |
ttgtgggcaaaaggttgatggggaatctggtgtgtcgtttg |
30230220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 30232591 - 30232929
Alignment:
| Q |
9 |
agagagatgaactaattatgcatgcacaatcaaatatcgcagacctcatactaccttttctttggtccattgtataaaaataccgtaaatttatatatat |
108 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||| ||||||||||||| || | || |
|
|
| T |
30232591 |
agagaaatgaactaatgatgcatgcacaatcaaatatctcacacctcatactacattttctttagtccattgtataacaataccgtaaattgatttctaa |
30232690 |
T |
|
| Q |
109 |
-ggctcttagattatgcaaaatcttttgaaatttttgtgaaaatatgattatgaatcacatacaactttgtcac----tcttaaaaatgttgcaaccctc |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| ||| |
|
|
| T |
30232691 |
aggctcttagattatgcaaaatcttttcaaatgtttgtgaaaatattattatgaatcacatacaactttgtcactctgtcttaaaaatgttgtaactctc |
30232790 |
T |
|
| Q |
204 |
tctctct----cactctatgttaatacttaattgttgcagtatcatctgtgaatgtagatggatgt---acgcatcctggatcatttggaggcatttgta |
296 |
Q |
| |
|
||| ||| | |||||| ||| |||||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
30232791 |
tctttctatcactctctatattattacttaatgattgcagtatcaactgtgaatgtagatggatgtatgatgcatcctggatcatttggaggcatttgta |
30232890 |
T |
|
| Q |
297 |
tacattgtgggaaaaaggttgatggggaatctggtgtgt |
335 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
30232891 |
tacattgtgggcaaaaggtggatggggaatctggtgtgt |
30232929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 34689553 - 34689897
Alignment:
| Q |
9 |
agagagatgaactaattatgcatgcacaatcaaatatcgcagacctcatactaccttttctttggtccattgtataaaaataccgtaaatttatatat-a |
107 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |||||||||||||||| | | | |
|
|
| T |
34689553 |
agagaaatgaactaatgatgcatgcacaatcaaatatttcacacctcatactaccttttctttagtccattgtataacaataccgtaaatttatttctaa |
34689652 |
T |
|
| Q |
108 |
tggctcttagattatgcaaaatct-tttgaaatttttgtgaaaatatgattatgaatcacatacaactttgtcac----tcttaaaaatgttgcaaccct |
202 |
Q |
| |
|
||||||||||||| ||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| || |
|
|
| T |
34689653 |
aggctcttagattacgcaaaatctcttccaaatgtttgtgaaaatatgattatgaatcacatacaactttgtcactctgtcttaaaaatgttgtaactct |
34689752 |
T |
|
| Q |
203 |
ctc--tctctca----ctctatgttaatacttaattgttgcagtatcatctgtgaatgtagatggatgtacgcatcctggatcatttggaggcatttgta |
296 |
Q |
| |
|
||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34689753 |
ctctttctctcactctctctatattaatacttaattgttggagtatcatctgtgaatgtagatggatgtatgcatcctggatcatttggaggcatttgta |
34689852 |
T |
|
| Q |
297 |
tacattgtgggaaaaaggttgatggggaatctggtgtgtcgtttg |
341 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
34689853 |
tacattgtggacaaaaggtggatggggaatctggtgtgtcatttg |
34689897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 26987504 - 26987848
Alignment:
| Q |
9 |
agagagatgaactaattatgcatgcacaatcaaatatcgcagacctcatactaccttttctttggtccattgtataaaaataccgtaaatttatatat-a |
107 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |||||||||||||||| | | | |
|
|
| T |
26987504 |
agagaaatgaactaatgatgcatgcacaatcaaatatttcacacctcatactaccttttctttagtccattgtataacaataccgtaaatttatttctaa |
26987603 |
T |
|
| Q |
108 |
tggctcttagattatgcaaaatct-tttgaaatttttgtgaaaatatgattatgaatcacatacaactttgtcac----tcttaaaaatgttgcaaccc- |
201 |
Q |
| |
|
||||||||||||| ||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | |
|
|
| T |
26987604 |
aggctcttagattacgcaaaatctcttccaaatatttgtgaaaatatgattatgaatcacatacaactttgtcactctgtcttaaaaatgttgtaactct |
26987703 |
T |
|
| Q |
202 |
-----tctctctctcactctatgttaatacttaattgttgcagtatcatctgtgaatgtagatggatgtacgcatcctggatcatttggaggcatttgta |
296 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26987704 |
cactttctctcactctctctatattaatacttaattgttggagtatcatctgtgaatgtagatggatgtatgcatcctggatcatttggaggcatttgta |
26987803 |
T |
|
| Q |
297 |
tacattgtgggaaaaaggttgatggggaatctggtgtgtcgtttg |
341 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
26987804 |
tacattgtggacaaaaggtggatggggaatctggtgtgtcatttg |
26987848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 26 - 341
Target Start/End: Complemental strand, 27077776 - 27077438
Alignment:
| Q |
26 |
atgcatgcacaatcaaatatcgcagacctcatactaccttttctttggtccattgtataaaaataccgtaaatttatatatat-ggctcttagattatgc |
124 |
Q |
| |
|
||||||||||| |||||| || || ||| |||||||| |||||||||||||||| ||||| |||||||||||||||| | || |||||||| ||||||| |
|
|
| T |
27077776 |
atgcatgcacactcaaatttctcacaccacatactacattttctttggtccattttataacaataccgtaaatttatttctaaaggctcttacattatgc |
27077677 |
T |
|
| Q |
125 |
aaaatcttttgaaatttttgtgaaaatatgattatgaatcacatacaactttgtcactcttaaaaatgttgcaaccctctctc----------------- |
207 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||| |
|
|
| T |
27077676 |
aaaatcttttcaaatgtttatgaaaatatgattatgaatcacatacaattttgtcactcttaaaaatgttgtatctctctctctctctatctttctcttt |
27077577 |
T |
|
| Q |
208 |
-tctcactct----atgttaatacttaattgttgcagtatcatctgtgaatgtagatggatgtacgcatcctggatcatttggaggcatttgtatacatt |
302 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27077576 |
ctctcactctctccatgttgatacttaattgttgcagtgtcatctgtgaatgtagatgtatgcatgcaccctggatcatttggaggcatttgtatacatt |
27077477 |
T |
|
| Q |
303 |
gtgggaaaaaggttgatggggaatctggtgtgtcgtttg |
341 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
27077476 |
gtgggcaaaaggtggatggggaatctggtgtgtcatttg |
27077438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 341
Target Start/End: Original strand, 27027111 - 27027324
Alignment:
| Q |
112 |
tcttagattatgcaaaatcttttgaaatttttgtgaaaatatgattatgaatcacatacaactttgtcactct----taaaaatgttgcaaccctctctc |
207 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||| ||| |||||| |
|
|
| T |
27027111 |
tcttagattatgcaaaatcttttcaaatatttgtgaaaatatgaatatgaataacatacaactttgtcactctgtctttaaaatgttgtaactctctct- |
27027209 |
T |
|
| Q |
208 |
tctcactctatgttaatacttaattgttgcagtatcatctgtgaatgtagatggatgtacgcatcctggatcatttggaggcatttgtatacattgtggg |
307 |
Q |
| |
|
|| || |||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27027210 |
---------atattgatacttaattgttgga-tat---------atgtagatggatgtatgcatcctggatcatttggaggcatttgtatacattgtggg |
27027290 |
T |
|
| Q |
308 |
aaaaaggttgatggggaatctggtgtgtcgtttg |
341 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||| |
|
|
| T |
27027291 |
caaaaggtggatgcggaatctggtgtgtcatttg |
27027324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 27027053 - 27027114
Alignment:
| Q |
9 |
agagagatgaactaattatgcatgcacaatcaaatatcgcagacctcatactaccttttctt |
70 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
27027053 |
agagaaatgaactaatgatgcatgcgcaatcaaatatcgcacaccccatactaccttttctt |
27027114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 50174792 - 50174704
Alignment:
| Q |
242 |
tcatctgtgaatgtagatggatgtacgcatcctggatcatttggaggcatttgtatacattgtgggaaaaaggttgatggggaatctgg |
330 |
Q |
| |
|
||||| ||||| ||||||| |||||| |||||||| |||||||||| || ||||||| ||| ||| ||||| | |||||||||||||| |
|
|
| T |
50174792 |
tcatccgtgaaggtagatgtatgtacacatcctggttcatttggagagatgtgtatacgttgcgggcaaaagttggatggggaatctgg |
50174704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University