View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12795_low_8 (Length: 307)
Name: NF12795_low_8
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 2912655 - 2912951
Alignment:
| Q |
1 |
gtctggaccgagttagttttatgattatgaatttataacgtttctttagctaatttgtaacaaaggtagtgaatattttcttcgatttgacaaagtaaaa |
100 |
Q |
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| T |
2912655 |
gtctggaccgagttagttttatgattatgaatttataatgtttctttagctaatttgtaacaaaggtagtcaatattttcttcgatttgacaaagtaaaa |
2912754 |
T |
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| Q |
101 |
gaacctgtaaaaccaatttttaagaagtattagagatnnnnnnnccgaaactaacacgagtagtttctgggtagtt-----attaattattcaaggaaat |
195 |
Q |
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| T |
2912755 |
gaacctgtaaaaccaatttttaaaaagtattagaggtaaaaaaaccgaaactaacacgagtagtttctgggtagtttattaattaattattcaaggaaat |
2912854 |
T |
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| Q |
196 |
tgctttaatagccttgagttgctcaacctatccgaatcttctgattttgcttatagaacctatcttctaatgtcccacgagcttccatcaatccgca |
292 |
Q |
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| T |
2912855 |
tgctttaatagccttgagttgctcaacctatccgaatcttctgattttgcttatagaacctatcttctaatgtcccacaagctttcatcaattcgca |
2912951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 2915055 - 2915113
Alignment:
| Q |
15 |
agttttatgattatgaatttataacgtttctttagctaatttgtaacaaaggtagtgaa |
73 |
Q |
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| T |
2915055 |
agttttatgattatgaatttttaatgtttcttcaggtaatttgtaccaaaggtaatgaa |
2915113 |
T |
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