View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12795_low_9 (Length: 295)
Name: NF12795_low_9
Description: NF12795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12795_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 42955138 - 42954875
Alignment:
| Q |
19 |
cagctgccatatttctaaacgaatcctttgacatgaaattaacacaagatatgcttcaaacttaaaaggacctcttcaggggaaaagaggtggcacaaat |
118 |
Q |
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| T |
42955138 |
cagctgccatatttctaaacgaatcctttgacatgaaattaacacaagatatgcttcaaacttaaaaggacctcttcaggggaaaagaggtggcacaaat |
42955039 |
T |
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| Q |
119 |
cttttcaccc-ttattgagtaaaagttgtgctcataacagttaaaaatggacattgttgtataattgtattggacagaaattcacccttataattcaaat |
217 |
Q |
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| T |
42955038 |
cttttcaccctttattgagtaaaagttgtgctcataacaattaaaaatggacattgttgtataattgtattggac---aattcacccttataattcaaat |
42954942 |
T |
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| Q |
218 |
ttggtagaacacccttcagtctcatgaagtcatcactcatattttcatttcttgttgccaacttcat |
284 |
Q |
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| T |
42954941 |
ttggtagaacacccttcagtctcatgaagtcatcactcatattttcatttcttgttgccaacttcat |
42954875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 52737945 - 52737898
Alignment:
| Q |
19 |
cagctgccatatttctaaacgaatcctttgacatgaaattaacacaag |
66 |
Q |
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| T |
52737945 |
cagctgccatatttaaaaacgaatcctttgacctgaaattaacgcaag |
52737898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 40632471 - 40632512
Alignment:
| Q |
25 |
ccatatttctaaacgaatcctttgacatgaaattaacacaag |
66 |
Q |
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| T |
40632471 |
ccatatttataaacgattcctttgacatgaaatcaacacaag |
40632512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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