View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12796_high_5 (Length: 275)
Name: NF12796_high_5
Description: NF12796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12796_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 27508423 - 27508167
Alignment:
| Q |
1 |
cggtctgtgatgtgccaccggagttgcaagatgatggtggtgaaggtaaccggctgtggaaggaggagcgcggtggtagtaaggcgagaattgattgctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
27508423 |
cggtctgtgatgtgccaccggagttgcaagatgatggtggtgaaggtaaccggctgtggaaggaggagcacggtggtagtaaggcgagaattgattgttg |
27508324 |
T |
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| Q |
101 |
tggtgatggtattgcggcggtggaggtggtggctgtggccggttacatgaactaaccgtttcaccatcgatctctttgcggtggaagttccggtgacagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27508323 |
tggtgatggtattgcggcggtggaggtggtggctgtggccggttacatgaactaaccgtttcaccatcgatctctttgcggtggaagttccggtgacagt |
27508224 |
T |
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| Q |
201 |
tacaagctgcgcaaataacagcttcaagtgttccttcttcaccggcagcgataaact |
257 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27508223 |
tacaagcggcgcaaataacagcttcaagtgttccttcttcaccggcagcaataaact |
27508167 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 35192866 - 35192931
Alignment:
| Q |
160 |
ttcaccatcgatctctttgcggtggaagttccggtgacagttacaagctgcgcaaataacagcttc |
225 |
Q |
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| T |
35192866 |
ttcaccatcgatctctttgcggtggaagttctggtgacagttacaagcggcgcaaataacagcttc |
35192931 |
T |
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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 44747927 - 44747992
Alignment:
| Q |
160 |
ttcaccatcgatctctttgcggtggaagttccggtgacagttacaagctgcgcaaataacagcttc |
225 |
Q |
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| T |
44747927 |
ttcaccatcgatctctttgcagtggaagttctggtgacagttacaagcggcgcaaataacagcttc |
44747992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 26146109 - 26146055
Alignment:
| Q |
203 |
caagctgcgcaaataacagcttcaagtgttccttcttcaccggcagcgataaact |
257 |
Q |
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||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
26146109 |
caagcggcgcaaatagcaacttcaagtgttccttcttcaccggcagcgataaact |
26146055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 1148332 - 1148386
Alignment:
| Q |
203 |
caagctgcgcaaataacagcttcaagtgttccttcttcaccggcagcgataaact |
257 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1148332 |
caagcggcgcaaataacagcttcaagtgttccttcttcaccggcagcgataaact |
1148386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 30232421 - 30232368
Alignment:
| Q |
204 |
aagctgcgcaaataacagcttcaagtgttccttcttcaccggcagcgataaact |
257 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30232421 |
aagcggcgcaaataacagcttcaagtgttccttcttcatcggcagcgataaact |
30232368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 137589 - 137535
Alignment:
| Q |
203 |
caagctgcgcaaataacagcttcaagtgttccttcttcaccggcagcgataaact |
257 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||| || ||||||||| |
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| T |
137589 |
caagcggcgcaaataacagcttcaagtgttccttgttcaccgacatcgataaact |
137535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 46301074 - 46301163
Alignment:
| Q |
160 |
ttcaccatcgatctctttgcggtggaagttccggtgacagttacaagctgcgcaaataacagcttcaagtgttccttcttcaccggcagc |
249 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||| |||||| || ||||| || ||||| ||||||||||| || |||||||| |
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| T |
46301074 |
ttcaccgtcgatttctttgcggtggaagttccggtgacagccacaagcagcacaaatcaccgcttccagtgttccttcctctccggcagc |
46301163 |
T |
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