View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12796_high_9 (Length: 240)

Name: NF12796_high_9
Description: NF12796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12796_high_9
NF12796_high_9
[»] chr4 (1 HSPs)
chr4 (14-222)||(13129845-13130053)
[»] chr6 (2 HSPs)
chr6 (33-217)||(28586937-28587121)
chr6 (53-153)||(17884529-17884629)
[»] chr5 (2 HSPs)
chr5 (69-215)||(15375312-15375457)
chr5 (45-93)||(35667174-35667222)
[»] chr2 (2 HSPs)
chr2 (39-158)||(25534138-25534257)
chr2 (47-219)||(32442182-32442357)
[»] chr8 (2 HSPs)
chr8 (35-134)||(19785743-19785842)
chr8 (54-163)||(16400997-16401106)
[»] chr3 (1 HSPs)
chr3 (182-222)||(8772396-8772436)
[»] chr7 (2 HSPs)
chr7 (179-220)||(20581297-20581338)
chr7 (29-134)||(20581374-20581479)
[»] chr1 (1 HSPs)
chr1 (54-153)||(18829358-18829457)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 13129845 - 13130053
Alignment:
Q  14 caaaggaaaaatcgatagtactaaccagaagttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgg 113  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13129845 caaagaaaaaatcgataatactaaccagaagttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacctagaaagtctcaactctattgg 13129944  T
Q  114 gaagctgcccataaaagaagctcggtatggtcttggtgaaagcattaactctaccccatcactgttgataagaaagatcaaaggaattcagataaaacca 213  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  13129945 gaagctgcccataaaagaagctcgatatggtcttggtgaaagcattaactctaccccatcactgttgataagaaagatcgaagaaattcaggtaaaacca 13130044  T
Q  214 tcaaatttc 222  Q
    |||||||||    
T  13130045 tcaaatttc 13130053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 217
Target Start/End: Original strand, 28586937 - 28587121
Alignment:
Q  33 actaaccagaagttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaa 132  Q
    |||||||||||  || ||||  ||||||||||||||| |||||||||  ||| | |  |||| |||| |||| |||||||| ||| ||  ||||||||||    
T  28586937 actaaccagaaactgaaatgccatatttcaaggacggctacctcaaactaagaagggtccaggaagtttcaattctattggaaagttgttcataaaagaa 28587036  T
Q  133 gctcggtatggtcttggtgaaagcattaactctaccccatcactgttgataagaaagatcaaaggaattcagataaaaccatcaa 217  Q
    |||||||||||| |  |||||  ||||||||||| |||||||   ||||||||||||||| ||||||||||| ||||| ||||||    
T  28587037 gctcggtatggtttaagtgaagtcattaactctatcccatcataattgataagaaagatcgaaggaattcaggtaaaatcatcaa 28587121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 17884529 - 17884629
Alignment:
Q  53 aaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcggtatggtcttggtga 152  Q
    |||||||||||| |  |||||||| ||||||| | ||||| | |||| |||| |||||||||||| ||  ||||||||||||||||| |||||| |||||    
T  17884529 aaatatttcaagcatagttacctccaaagaagaaggaccctggaagtttcaattctattgggaagttgttcataaaagaagctcggtgtggtctaggtga 17884628  T
Q  153 a 153  Q
    |    
T  17884629 a 17884629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 15375312 - 15375457
Alignment:
Q  69 gttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcggtatggtcttggtgaaagcattaactctacc 168  Q
    |||||||| ||||||| | |||||| ||||  |||| | ||| ||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  15375312 gttacctctaaagaagaaggaccca-aaagcttcaattatatcgggaagctatccataaaagaagctcgatatggtcttggagaaagcattaactctacc 15375410  T
Q  169 ccatcactgttgataagaaagatcaaaggaattcagataaaaccatc 215  Q
    |||||| || | |||||||||||  ||||||| ||| || |||||||    
T  15375411 ccatcattgctaataagaaagattgaaggaatccaggtacaaccatc 15375457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 35667174 - 35667222
Alignment:
Q  45 ttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgaccca 93  Q
    |||||||||||||||| ||||||||| ||||| ||||||| | ||||||    
T  35667174 ttgtaatgaaatattttaaggacggtcacctccaaagaagaaggaccca 35667222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 25534257 - 25534138
Alignment:
Q  39 cagaagttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcgg 138  Q
    |||||||||||| | | ||||||||||||||||||||| ||||||| | | ||| | |||| |||| ||||||||||||||| || ||||||||||||||    
T  25534257 cagaagttgtaaggcactatttcaaggacggttacctctaaagaagaagggccctggaagtttcaattctattgggaagctgtccgtaaaagaagctcgg 25534158  T
Q  139 tatggtcttggtgaaagcat 158  Q
    |  ||||| |||||| ||||    
T  25534157 tggggtctgggtgaaggcat 25534138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 32442182 - 32442357
Alignment:
Q  47 gtaatgaaatatttcaaggacggttacctcaaaagaagc---atgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcggtatgg 143  Q
    |||||| ||||||||||||||||  ||||||||| ||     ||||||||  |||| |||| |||||||||||| || ||||| | |||| ||||| |||    
T  32442182 gtaatgcaatatttcaaggacggcaacctcaaaataatagtaatgacccaagaagtttcaattctattgggaagttgtccatagaggaagttcggtgtgg 32442281  T
Q  144 tcttggtgaaagcattaactctaccccatcactgttgataagaaagatcaaaggaattcagataaaaccatcaaat 219  Q
    |||||| ||| | ||||| |||| | ||||| ||| |||||  |||||| ||| | ||||| ||||||||| ||||    
T  32442282 tcttggcgaagggattaaatctatctcatcattgtggataacgaagatcgaagaagttcaggtaaaaccattaaat 32442357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 19785842 - 19785743
Alignment:
Q  35 taaccagaagttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagc 134  Q
    |||| |||| |||||||| ||||| |||||||| |||||||||||||||| |  |||||| |||| |||| |||||||||||| || |||| ||| ||||    
T  19785842 taactagaaattgtaatgcaatatctcaaggacagttacctcaaaagaagaagaacccaggaagtttcaattctattgggaagttgtccattaaaaaagc 19785743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 16401106 - 16400997
Alignment:
Q  54 aatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcggtatggtcttggtgaa 153  Q
    ||||||||||||||| ||||||| ||||||| | ||||  | |||| |||| ||||||| ||||||| || | ||| ||||||||| |||||| ||||||    
T  16401106 aatatttcaaggacgattacctctaaagaagaaggaccttggaagtttcaattctattgcgaagctgtccgtgaaacaagctcggtgtggtctgggtgaa 16401007  T
Q  154 agcattaact 163  Q
     |||| ||||    
T  16401006 ggcataaact 16400997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 8772436 - 8772396
Alignment:
Q  182 taagaaagatcaaaggaattcagataaaaccatcaaatttc 222  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  8772436 taagaaagatcaaaggaattcaggtaaaaccatcaaatttc 8772396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 20581338 - 20581297
Alignment:
Q  179 tgataagaaagatcaaaggaattcagataaaaccatcaaatt 220  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  20581338 tgataagaaagatcgaaggaattcagttaaaaccatcaaatt 20581297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 20581479 - 20581374
Alignment:
Q  29 tagtactaaccagaagttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaa 128  Q
    ||||| |||||||||||||||||| ||||| |||| |  |||||||||||| |||| | || |||| ||   |||| |||||||||||| || |||| ||    
T  20581479 tagtattaaccagaagttgtaatgcaatatctcaatggtggttacctcaaacgaagaaggagccaggaaccttcaattctattgggaagttgtccattaa 20581380  T
Q  129 agaagc 134  Q
    | ||||    
T  20581379 aaaagc 20581374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 18829457 - 18829358
Alignment:
Q  54 aatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcggtatggtcttggtgaa 153  Q
    |||||||||||||| | |||||  ||||||| | ||| | | |||| |||| ||||||||||||||| |  | ||||||||||||| |||||| ||||||    
T  18829457 aatatttcaaggacagatacctttaaagaagaaggactctggaagtttcaattctattgggaagctgtctgtgaaagaagctcggtgtggtctaggtgaa 18829358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University