View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12796_low_1 (Length: 657)
Name: NF12796_low_1
Description: NF12796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12796_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 43943638 - 43943211
Alignment:
| Q |
17 |
acaacaattctccacttaatttgggtcggagagagtaatagnnnnnnnnn-cttcggagagagtaatagnnnnnnnaataagacagtattatcactaacg |
115 |
Q |
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| T |
43943638 |
acaacaattctccacttaatttgggtcggagagagtaatagttttttttttcttcggagagagtaatagtttttttaataagacagtattatcactaacg |
43943539 |
T |
|
| Q |
116 |
taaatttcttagcctcttaaaaaattgtctattgattcattaactagtgctataccaggtagtctcacactcgacccccatgtgatgtgagaatagtgca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43943538 |
taaatttcttagcctcttaaaaaattgtctattgattcattaactagtgctatagcaggtagtctcacactcgacccccatgtgatgtgagaatagtgca |
43943439 |
T |
|
| Q |
216 |
aagaaaccagaggcttaaaagaaagtaacgtgacatcgnnnnnnntgagaatatagtgagatgtgtggaaaacatagaaatgtcgtgaaagaaaagtgta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43943438 |
aagaaaccagaggcttaaaagaaagtaacgtgacatcgaaaaaaatgagaatatagtgagatgtgtggaaaacatagaaatgtcgtgaaagaaaaatgta |
43943339 |
T |
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| Q |
316 |
taaaagagaatatttatcacaaattattagggtt----------------------taaaaatatttttacatatataatcaatcaaatatatcattcca |
393 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
43943338 |
taaaagagaatatttatcacaaattattagggtttaatttgtatagaccgacaatgtaaaaatatttttacatttttaatcaatcaaatatatcattcca |
43943239 |
T |
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| Q |
394 |
tccatatttgtagagatattttaaaaaa |
421 |
Q |
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| T |
43943238 |
tccatatttatagagatattttaaaaaa |
43943211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 413 - 519
Target Start/End: Complemental strand, 43942709 - 43942602
Alignment:
| Q |
413 |
tttaaaaaataacttataaaagtggcacaaagata-gatttaaaactatggagtattacttaagtcaagagatgcaaattagaggaagtcttacttagac |
511 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43942709 |
tttaaaaaataacttataaaagtggcacaaagatatgatttaaaactatggagtattacttaagtcaagagatgcaaattagaggaagtcttacttagac |
43942610 |
T |
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| Q |
512 |
acaacttc |
519 |
Q |
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|||||||| |
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| T |
43942609 |
acaacttc |
43942602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 164106 - 164149
Alignment:
| Q |
397 |
atatttgtagagatattttaaaaaataacttataaaagtggcac |
440 |
Q |
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| T |
164106 |
atatttgtagagatattttaaaaactgactcataaaagtggcac |
164149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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