View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12796_low_11 (Length: 238)
Name: NF12796_low_11
Description: NF12796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12796_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 27232357 - 27232151
Alignment:
| Q |
13 |
cataggttattagggcacagtgatttccagaaaagatgaatgcctcattgtgttgggtctcaaaggcacaatctattccatgttcaaatggagttctagc |
112 |
Q |
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| T |
27232357 |
cataggttattagggcacagtgatttccagaaaagatgaatgcctcattgtgttgggtctcaaaggcacaatctattccatgttcaaatggagttctagc |
27232258 |
T |
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| Q |
113 |
aagcattacaaaaccagctacaatatgaagtggccccttcaaaatctcatgcttcttagctcccggtgcataattcaaaacaacatacttatcgtcgacg |
212 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || || |
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| T |
27232257 |
aagcattgcaaaaccagctacaatatgaagtggccccttcaaaatctcatgcttcttcgctcccggtgcataattcaaaaccacatacttatcatcaaca |
27232158 |
T |
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| Q |
213 |
aaaacgt |
219 |
Q |
| |
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||||||| |
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| T |
27232157 |
aaaacgt |
27232151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 26819252 - 26819458
Alignment:
| Q |
13 |
cataggttattagggcacagtgatttccagaaaagatgaatgcctcattgtgttgggtctcaaaggcacaatctattccatgttcaaatggagttctagc |
112 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26819252 |
cataggttataagggcacaatgatttccagaaaagatgaatgcctcattgtgttgggtctcaaaggcacaatctattccatgttcaaatggagttctggc |
26819351 |
T |
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| Q |
113 |
aagcattacaaaaccagctacaatatgaagtggccccttcaaaatctcatgcttcttagctcccggtgcataattcaaaacaacatacttatcgtcgacg |
212 |
Q |
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||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || ||| |
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| T |
26819352 |
aagcattgcaaaaccagctacaatgtgaagtggccctttcaaaatctcatgcttcttggctcctggtgcataattcaaaaccacatacttatcatcaacg |
26819451 |
T |
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| Q |
213 |
aaaacgt |
219 |
Q |
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||||||| |
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| T |
26819452 |
aaaacgt |
26819458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 17771529 - 17771604
Alignment:
| Q |
26 |
ggcacagtgatttccagaaaagatgaatgcctcattgtgttgggtctcaaaggcacaatctattccatgttcaaat |
101 |
Q |
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|||||| ||||| ||||| ||||||||||||| ||||||| | | || ||||||||||| ||||||| ||||||| |
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| T |
17771529 |
ggcacattgattcccagagaagatgaatgccttgttgtgtttgatgtccaaggcacaatcgattccattttcaaat |
17771604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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