View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12796_low_13 (Length: 221)
Name: NF12796_low_13
Description: NF12796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12796_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 5828496 - 5828305
Alignment:
| Q |
15 |
atgaaattgaaaattgtaggatataatatacataccaaaagatgtatggatgagaaaagaagaaagtaacaaaaccaaaggcaatttggttgagaaagac |
114 |
Q |
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| T |
5828496 |
atgaaattgaaaattgtaggatataatatacataccaaaagatgtatggatgagaaaagaagaaagtaacaaaaccaaaggcaatttggttgagaaagac |
5828397 |
T |
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| Q |
115 |
atggttctatgtaaaaagtatagttttggcaaatatgatgagatattatttagcaaagaaggaacaatagattatttctctttctttgtttt |
206 |
Q |
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| T |
5828396 |
atggttctatgtaaaaagtatagttttggcaaatatgatgagatattatttagcaaagaaggaacaatagattatttctctttctttgtttt |
5828305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 5823358 - 5823529
Alignment:
| Q |
15 |
atgaaattgaaaattgtaggatataatatacataccaaaagatgtatggatgagaaaagaagaaagtaacaaaaccaaaggcaatttggttgagaaagac |
114 |
Q |
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| T |
5823358 |
atgaaattgaaaattgtaggatatagtatgcataccaaaagatgtatggatgagaaaagaagagagtaacaaaatcaaaggcaattttgttgagaaagac |
5823457 |
T |
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| Q |
115 |
atggttctatgtaaaaagtatagttttggc-----aaatatgatgagatattatttagcaaagaaggaacaata |
183 |
Q |
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| T |
5823458 |
atggttctacgt-aaaagtata-atttggcaaattaaatatgatgaaatattagttaggaaagaaggaataata |
5823529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 5833253 - 5833335
Alignment:
| Q |
38 |
taatatacataccaaaagatgtatggatgagaaaagaagaaagtaacaaaaccaaaggcaatttggttgagaaagacatggtt |
120 |
Q |
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| T |
5833253 |
taatatacatacctaaagaagcatggatgagaaaagaagaaagtaataaaaccaatgatagtttggttgagaaagacatggtt |
5833335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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