View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12796_low_2 (Length: 592)

Name: NF12796_low_2
Description: NF12796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12796_low_2
NF12796_low_2
[»] chr5 (23 HSPs)
chr5 (200-581)||(10137626-10138011)
chr5 (1-104)||(32473391-32473494)
chr5 (1-104)||(17208074-17208177)
chr5 (1-104)||(30622716-30622818)
chr5 (5-104)||(7617133-7617232)
chr5 (5-102)||(5256997-5257094)
chr5 (5-105)||(41334664-41334764)
chr5 (5-104)||(2614650-2614749)
chr5 (5-104)||(22512305-22512404)
chr5 (5-104)||(18033982-18034081)
chr5 (32-105)||(33855071-33855144)
chr5 (5-104)||(33801469-33801568)
chr5 (5-104)||(38470579-38470678)
chr5 (117-199)||(17009938-17010020)
chr5 (133-200)||(36516941-36517008)
chr5 (225-271)||(2239093-2239139)
chr5 (117-199)||(17943235-17943317)
chr5 (131-200)||(32664373-32664442)
chr5 (131-199)||(8376066-8376134)
chr5 (46-102)||(25915029-25915085)
chr5 (132-192)||(14481699-14481759)
chr5 (131-199)||(20027662-20027730)
chr5 (152-200)||(31308780-31308828)
[»] chr8 (30 HSPs)
chr8 (1-104)||(35181516-35181619)
chr8 (1-104)||(34304788-34304891)
chr8 (1-104)||(18066715-18066818)
chr8 (1-102)||(33629990-33630091)
chr8 (1-104)||(16603623-16603726)
chr8 (1-103)||(16358830-16358933)
chr8 (5-104)||(11582766-11582865)
chr8 (5-104)||(29705362-29705461)
chr8 (5-104)||(36743484-36743583)
chr8 (5-102)||(29800951-29801048)
chr8 (5-102)||(42295197-42295294)
chr8 (5-102)||(26125637-26125734)
chr8 (10-102)||(20148762-20148854)
chr8 (5-104)||(1375542-1375641)
chr8 (5-104)||(5754903-5755002)
chr8 (5-104)||(30660743-30660842)
chr8 (5-96)||(31384672-31384763)
chr8 (5-104)||(42197436-42197535)
chr8 (17-102)||(30912575-30912660)
chr8 (10-102)||(42699259-42699351)
chr8 (5-104)||(2165964-2166063)
chr8 (5-104)||(2546996-2547095)
chr8 (16-103)||(45397317-45397404)
chr8 (1-62)||(10678149-10678210)
chr8 (1-104)||(19386562-19386670)
chr8 (5-104)||(40528635-40528735)
chr8 (131-200)||(16230245-16230314)
chr8 (68-104)||(10678204-10678240)
chr8 (5-54)||(32328818-32328867)
chr8 (131-199)||(6813846-6813914)
[»] chr2 (34 HSPs)
chr2 (1-104)||(43114557-43114660)
chr2 (1-102)||(11825651-11825752)
chr2 (1-102)||(41281971-41282072)
chr2 (1-104)||(12415457-12415560)
chr2 (1-104)||(12427517-12427620)
chr2 (1-104)||(16803968-16804071)
chr2 (1-104)||(16843250-16843353)
chr2 (1-104)||(966831-966934)
chr2 (1-104)||(18491705-18491808)
chr2 (1-104)||(34895738-34895841)
chr2 (19-102)||(6518484-6518566)
chr2 (4-102)||(4299420-4299518)
chr2 (5-103)||(34817777-34817875)
chr2 (5-104)||(1750414-1750513)
chr2 (5-104)||(30838632-30838731)
chr2 (1-80)||(4451947-4452026)
chr2 (5-104)||(12302254-12302353)
chr2 (5-104)||(16096747-16096846)
chr2 (5-103)||(19047158-19047256)
chr2 (1-86)||(12531660-12531744)
chr2 (5-104)||(4764727-4764826)
chr2 (5-104)||(13780736-13780835)
chr2 (1-104)||(14285676-14285779)
chr2 (5-102)||(43490402-43490499)
chr2 (5-104)||(43335764-43335863)
chr2 (8-102)||(8896587-8896681)
chr2 (117-199)||(12630207-12630289)
chr2 (116-200)||(33737086-33737170)
chr2 (8-104)||(42026767-42026865)
chr2 (16-102)||(7070418-7070504)
chr2 (25-102)||(33229303-33229381)
chr2 (10-62)||(42849864-42849916)
chr2 (133-199)||(5562574-5562640)
chr2 (68-104)||(42849910-42849946)
[»] chr1 (28 HSPs)
chr1 (1-104)||(44112677-44112780)
chr1 (3-104)||(41065153-41065254)
chr1 (1-104)||(45427742-45427845)
chr1 (1-104)||(48119628-48119731)
chr1 (1-104)||(35003294-35003397)
chr1 (1-104)||(38113192-38113295)
chr1 (1-104)||(38335918-38336021)
chr1 (1-104)||(46168383-46168486)
chr1 (1-104)||(45639729-45639832)
chr1 (1-104)||(45705825-45705928)
chr1 (1-104)||(35000110-35000213)
chr1 (5-104)||(43571087-43571186)
chr1 (5-104)||(5489776-5489875)
chr1 (1-104)||(26585462-26585565)
chr1 (47-104)||(14427347-14427404)
chr1 (5-104)||(37814778-37814877)
chr1 (5-104)||(48498963-48499062)
chr1 (5-104)||(23989524-23989624)
chr1 (10-102)||(2497568-2497660)
chr1 (5-104)||(750306-750405)
chr1 (5-104)||(24769500-24769599)
chr1 (5-102)||(4401329-4401427)
chr1 (5-102)||(7447828-7447924)
chr1 (16-104)||(50448272-50448360)
chr1 (116-198)||(17176038-17176120)
chr1 (151-200)||(29706027-29706076)
chr1 (227-296)||(44078270-44078339)
chr1 (10-62)||(4888085-4888137)
[»] chr3 (29 HSPs)
chr3 (1-104)||(9434124-9434227)
chr3 (1-104)||(10457889-10457992)
chr3 (1-104)||(34791829-34791932)
chr3 (1-104)||(51757593-51757696)
chr3 (1-104)||(4190262-4190365)
chr3 (1-104)||(25996268-25996371)
chr3 (1-104)||(52627974-52628077)
chr3 (10-104)||(45126934-45127028)
chr3 (16-104)||(42100688-42100776)
chr3 (5-104)||(40808865-40808964)
chr3 (5-104)||(46941053-46941152)
chr3 (5-103)||(54237097-54237195)
chr3 (5-104)||(24688403-24688502)
chr3 (5-104)||(25413681-25413780)
chr3 (5-104)||(36150130-36150229)
chr3 (5-104)||(54246149-54246248)
chr3 (5-103)||(40480750-40480848)
chr3 (5-103)||(42394420-42394518)
chr3 (5-102)||(27748565-27748662)
chr3 (5-102)||(53581859-53581956)
chr3 (4-104)||(53273684-53273784)
chr3 (5-104)||(47191027-47191125)
chr3 (5-89)||(51249323-51249407)
chr3 (131-198)||(27356633-27356700)
chr3 (131-199)||(15103127-15103195)
chr3 (19-100)||(29558249-29558330)
chr3 (457-509)||(5301140-5301192)
chr3 (117-200)||(20129440-20129523)
chr3 (1-61)||(19148822-19148882)
[»] chr7 (35 HSPs)
chr7 (1-104)||(40236919-40237022)
chr7 (1-104)||(31513287-31513390)
chr7 (1-103)||(31408630-31408732)
chr7 (1-104)||(27535228-27535331)
chr7 (1-104)||(33384870-33384974)
chr7 (5-102)||(10573751-10573848)
chr7 (5-104)||(24001013-24001112)
chr7 (5-104)||(42538432-42538531)
chr7 (5-102)||(4638200-4638297)
chr7 (5-104)||(24280597-24280696)
chr7 (5-104)||(35069721-35069820)
chr7 (5-102)||(43343625-43343722)
chr7 (5-102)||(44416935-44417032)
chr7 (16-104)||(9216302-9216389)
chr7 (10-102)||(44326180-44326272)
chr7 (5-104)||(5015395-5015494)
chr7 (5-104)||(5810925-5811024)
chr7 (10-101)||(26898408-26898499)
chr7 (16-104)||(42972852-42972940)
chr7 (37-104)||(39998408-39998475)
chr7 (5-104)||(43317443-43317542)
chr7 (5-104)||(41861674-41861775)
chr7 (5-104)||(5194232-5194331)
chr7 (5-104)||(45326020-45326119)
chr7 (117-199)||(24501700-24501782)
chr7 (5-95)||(32029818-32029908)
chr7 (117-200)||(23925792-23925875)
chr7 (5-88)||(27393261-27393344)
chr7 (5-102)||(16180358-16180454)
chr7 (133-200)||(34144243-34144310)
chr7 (131-200)||(27289104-27289173)
chr7 (5-66)||(38160580-38160641)
chr7 (410-508)||(15965835-15965933)
chr7 (131-199)||(22938857-22938925)
chr7 (52-104)||(47279745-47279797)
[»] chr4 (41 HSPs)
chr4 (1-104)||(17619149-17619252)
chr4 (1-104)||(711960-712063)
chr4 (1-104)||(32728357-32728460)
chr4 (1-104)||(55272373-55272476)
chr4 (1-104)||(48435576-48435679)
chr4 (1-104)||(960867-960970)
chr4 (1-102)||(3756244-3756344)
chr4 (5-104)||(28988473-28988572)
chr4 (3-102)||(35037007-35037106)
chr4 (1-104)||(46827703-46827806)
chr4 (1-102)||(38851515-38851616)
chr4 (5-102)||(27893843-27893940)
chr4 (5-104)||(33703141-33703240)
chr4 (10-104)||(27864564-27864658)
chr4 (16-104)||(1771278-1771366)
chr4 (16-104)||(55966358-55966446)
chr4 (17-104)||(28982835-28982922)
chr4 (5-103)||(41878407-41878505)
chr4 (5-105)||(41847970-41848070)
chr4 (5-104)||(23035980-23036079)
chr4 (5-104)||(25051693-25051792)
chr4 (5-104)||(27550309-27550408)
chr4 (1-71)||(19879987-19880057)
chr4 (10-104)||(48463456-48463550)
chr4 (5-102)||(41327544-41327641)
chr4 (24-104)||(49229684-49229764)
chr4 (5-104)||(35017733-35017831)
chr4 (16-102)||(43514698-43514784)
chr4 (5-102)||(43949802-43949900)
chr4 (5-104)||(12496956-12497055)
chr4 (5-104)||(27316714-27316813)
chr4 (5-104)||(45490314-45490413)
chr4 (5-102)||(39631102-39631200)
chr4 (117-199)||(49947174-49947256)
chr4 (5-102)||(31680904-31681001)
chr4 (1-62)||(36004113-36004174)
chr4 (5-101)||(23204779-23204875)
chr4 (68-104)||(36004168-36004204)
chr4 (5-104)||(21687006-21687105)
chr4 (131-192)||(37941439-37941500)
chr4 (152-200)||(17784280-17784328)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-104)||(35453-35556)
[»] chr6 (23 HSPs)
chr6 (1-104)||(33242403-33242506)
chr6 (1-102)||(27441544-27441645)
chr6 (4-104)||(33253913-33254013)
chr6 (5-104)||(13743222-13743321)
chr6 (5-104)||(13748722-13748821)
chr6 (10-102)||(24203993-24204085)
chr6 (5-104)||(7273336-7273435)
chr6 (5-104)||(9698334-9698433)
chr6 (5-104)||(26670010-26670109)
chr6 (5-104)||(3213400-3213499)
chr6 (5-104)||(26466799-26466898)
chr6 (5-104)||(30014343-30014442)
chr6 (1-104)||(31109219-31109322)
chr6 (5-104)||(7292747-7292846)
chr6 (10-104)||(7367549-7367643)
chr6 (5-104)||(21279929-21280028)
chr6 (5-102)||(30735984-30736081)
chr6 (5-104)||(21293678-21293777)
chr6 (131-200)||(33292456-33292525)
chr6 (117-200)||(16729739-16729822)
chr6 (116-200)||(22474537-22474621)
chr6 (133-200)||(28247598-28247665)
chr6 (131-192)||(20511840-20511901)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-102)||(45716-45817)
[»] scaffold0385 (1 HSPs)
scaffold0385 (5-104)||(11251-11350)
[»] scaffold0119 (1 HSPs)
scaffold0119 (5-104)||(685-784)
[»] scaffold0038 (2 HSPs)
scaffold0038 (5-103)||(112656-112754)
scaffold0038 (133-200)||(47760-47827)
[»] scaffold0187 (2 HSPs)
scaffold0187 (5-104)||(14189-14288)
scaffold0187 (5-104)||(24517-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (5-104)||(23422-23521)
[»] scaffold0548 (1 HSPs)
scaffold0548 (131-199)||(9809-9877)
[»] scaffold0089 (1 HSPs)
scaffold0089 (131-201)||(32774-32844)
[»] scaffold0002 (1 HSPs)
scaffold0002 (133-199)||(366058-366124)


Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 200 - 581
Target Start/End: Complemental strand, 10138011 - 10137626
Alignment:
Q  200 aggctatgacattagtattaagcatttgataatggaaatttggcatgatgcaaagacaataggtagaggtaccaaagtgtgcaggttatacatgttatag 299  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10138011 aggctatgacattggtattaggcatttgataatggaaatttggtatgatgcaaagacaataggtagaggtaccaaagtgtgcaggttatacatgttatag 10137912  T
Q  300 ttatactattagttatgctagtcaaaactt----gcatgatgattctgagatatgtggaattaggttggtgcatgttagtgacgacatggttttagctat 395  Q
    |||||||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10137911 ttatactattggttatgctagtcaaaacttaattgcatgatgattctgagatatgtggaattaggttggtgcatgttagtgacgacatggttttagctag 10137812  T
Q  396 actagatgaataaagttggaaaatacattgtaaacatcttagggagtgattataataagtaggttgagagaggaaatgagagaaattgaggatttctttt 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  10137811 actagatgaataaagttggaaaatacattgtaaacatcttagggagtgattataatgagtaggttgagagaagaaatgagagaaattgaggatttctttt 10137712  T
Q  496 ggagagcaattgaatacaattacctcgtcatttttgtaactcttgtttaagagaaaatagtcaaaaaggatagaaagtgaagtttt 581  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10137711 ggagagcaattgaaaacaattacctggtcatttttgtaactcttgtttaagagaaaatagtgaaaaaggatagaaagtgaagtttt 10137626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32473391 - 32473494
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  32473391 atgaaagagaaagtatggttgtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacatt 32473490  T
Q  101 ttcc 104  Q
    ||||    
T  32473491 ttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17208177 - 17208074
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  17208177 atgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacatt 17208078  T
Q  101 ttcc 104  Q
    ||||    
T  17208077 ttcc 17208074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30622716 - 30622818
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||| || |||||||||| ||| ||||||||||| | |||||||||||||||||||||||| |||||||||||||||    
T  30622716 atgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatgggct-tacaatagggtgtatgattaaaggatgttcatgtaacatt 30622814  T
Q  101 ttcc 104  Q
    ||||    
T  30622815 ttcc 30622818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 7617232 - 7617133
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||| ||| | |||||||| ||||||||||||||||||||||||||    
T  7617232 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcc 7617133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 5257094 - 5256997
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  5257094 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 41334664 - 41334764
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  41334664 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T
Q  105 g 105  Q
    |    
T  41334764 g 41334764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 2614650 - 2614749
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  2614650 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 2614749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 22512404 - 22512305
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||    
T  22512404 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 22512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 18034081 - 18033982
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||||| |||||||| ||| ||||||||||| | ||||| || ||||||||||||||||||||||||||    
T  18034081 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 18033982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 33855071 - 33855144
Alignment:
Q  32 ttaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccg 105  Q
    |||||||||||| |||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  33855071 ttaccaaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttccg 33855144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 33801568 - 33801469
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||||| |||||||| ||||| ||||||||| |||||||  | |||||| |||||||||||||||||||    
T  33801568 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcc 33801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 38470678 - 38470579
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| || |||||| ||||| |||||||||| ||| |||| ||||||||||||||| |  ||||||| ||||||||||| ||||||||||||||    
T  38470678 aagataaagtgtgattgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcc 38470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 17009938 - 17010020
Alignment:
Q  117 aggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||  ||| ||||||||||||||||| || ||||||||||||||| | ||||||||||| | ||||||||| ||||||    
T  17009938 aggtctataatttgcatttttaatagcatttatccaaaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtg 17010020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 36517008 - 36516941
Alignment:
Q  133 tttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||||||||| || | ||  ||||||||| | ||||||||||||| |||||||||||||||||    
T  36517008 tttttaatagcatttatccataagtgctattaaaattgtgctattaaaggccaaaattgtagtagtga 36516941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 2239139 - 2239093
Alignment:
Q  225 ttgataatggaaatttggcatgatgcaaagacaataggtagaggtac 271  Q
    |||||||||||||||| |||||||||||| | |||||||||||||||    
T  2239139 ttgataatggaaatttcgcatgatgcaaatataataggtagaggtac 2239093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 17943235 - 17943317
Alignment:
Q  117 aggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    |||||||||  || ||||||||||||||||| || | ||||||||||||| |  |||||||||| | ||||||||| ||||||    
T  17943235 aggtctatgagttgcatttttaatagcatttatccagaaacgctattaaaataatgctattaaaagccaaaattgtggtagtg 17943317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 32664442 - 32664373
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||||||||||| || | ||||||||||||| |  |||||||||| | ||||||||| |||||||    
T  32664442 catttttaatagcatttatccagaaacgctattaaaataatgctattaaaagccaaaattgtggtagtga 32664373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 8376134 - 8376066
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||||||||||| |  ||||||||||||||| | |||||||||||   ||||||||| ||||||    
T  8376134 catttttaatagcatttattcaaaaacgctattaaaattgtgctattaaaatccaaaattgtggtagtg 8376066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 25915029 - 25915085
Alignment:
Q  46 ctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    ||||| ||| |||||||||||  |||||| || ||||||||||||||||||||||||    
T  25915029 ctaatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 25915085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 14481759 - 14481699
Alignment:
Q  132 atttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgt 192  Q
    |||||||||||| ||| |  | ||||||||||||| | ||||||||||||| |||||||||    
T  14481759 atttttaatagcttttatgtacaaacgctattaaaattgtgctattaaaggccaaaattgt 14481699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 20027730 - 20027662
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||||||||||| |  ||||||||||||||| |   ||||||||| | ||||||||| ||||||    
T  20027730 catttttaatagcatttattcaaaaacgctattaaaattacgctattaaaagccaaaattgtggtagtg 20027662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 31308828 - 31308780
Alignment:
Q  152 aaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||||||||| | | ||||||||| | |||||||||||||||||    
T  31308828 aaaaacgctattaaatttgcgctattaaaagccaaaattgtagtagtga 31308780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35181619 - 35181516
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35181619 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 35181520  T
Q  101 ttcc 104  Q
    ||||    
T  35181519 ttcc 35181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 34304891 - 34304788
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34304891 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacatt 34304792  T
Q  101 ttcc 104  Q
    ||||    
T  34304791 ttcc 34304788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 18066715 - 18066818
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  18066715 atgaaagagaaagtatggttgtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacatt 18066814  T
Q  101 ttcc 104  Q
    ||||    
T  18066815 ttcc 18066818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 33629990 - 33630091
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||||| |||||||||    
T  33629990 atgaaagagaaagtatagttgtgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatt 33630089  T
Q  101 tt 102  Q
    ||    
T  33630090 tt 33630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 16603623 - 16603726
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||| |||||||||||||||||||| |||||||||||||  |||||||||||||||| |||| |||||||||||||||||||| |||||||||||    
T  16603623 atgaaagagtaagtatggttgtgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacatt 16603722  T
Q  101 ttcc 104  Q
    ||||    
T  16603723 ttcc 16603726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16358830 - 16358933
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttc-atgtaacat 99  Q
    |||||| ||||||||||||||||||||||| ||| |||||| | | ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||    
T  16358830 atgaaaaagaaagtatggttgtgagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaacat 16358929  T
Q  100 tttc 103  Q
    ||||    
T  16358930 tttc 16358933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 11582865 - 11582766
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  11582865 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 11582766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 29705461 - 29705362
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| ||| |||||| |||||||| ||||||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  29705461 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 29705362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 36743484 - 36743583
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  36743484 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 36743583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 29800951 - 29801048
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  29800951 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 29801048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 42295294 - 42295197
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||| |||||||||  |||||| || ||||||||||||||||||||||||    
T  42295294 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 26125734 - 26125637
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| |  ||||||| ||||||||||| ||||||||||||    
T  26125734 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 20148854 - 20148762
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    ||||| ||||||||||||||| |||||||||| ||||||||  ||| |||||||||| || ||||||| ||||||||||| ||||||||||||    
T  20148854 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 20148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 1375641 - 1375542
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| | |||||||||| || |||||||||| ||||||||  |||||||||||||| |||||||||| |||| ||||||||||||| |||||||    
T  1375641 aagataaagtgtagttgtgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaattttcc 1375542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 5755002 - 5754903
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| ||||||||  ||||| |||||||| || |||| || |||| |||||||||||||||||||||    
T  5755002 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcc 5754903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 30660743 - 30660842
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||| ||||||| |||||||||| |||||||| ||| ||||||||||| || ||||  | ||||||||||||||||||||||||||    
T  30660743 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttcc 30660842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 31384763 - 31384672
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaa 96  Q
    |||| ||||| ||||||||||||||| |||||||||| | |||||| |||||||||||||||||  |||| || ||||||||||||||||||    
T  31384763 aagataaagtgtggttgtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 42197436 - 42197535
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| | |||| |||| ||||||| || |||| |||||||||||||||||||||    
T  42197436 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacattttcc 42197535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 30912575 - 30912660
Alignment:
Q  17 ggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||||||||||||| ||||||||||  ||||||| ||||  ||||||||| ||||||| || ||||||||||||||||||||||||    
T  30912575 ggttgtgagatgaacttaccaaaatacccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 42699351 - 42699259
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    ||||| ||||||||||||||| |||| ||||| ||| |||| |||  |||||||||| ||||||| || ||||||||||||||||||||||||    
T  42699351 aaagtgtggttgtgagatgaacttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 2165964 - 2166063
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||| ||||||||| |||||||||| || ||||| |||||||| |||||| ||||||| || |||| ||||||||||||| |||||||    
T  2165964 aagataaagtgtggttatgagatgaacttaccaaaatatctctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatattttcc 2166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 2547095 - 2546996
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||||| |||||||| |||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  2547095 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 2546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 45397404 - 45397317
Alignment:
Q  16 tggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 103  Q
    ||||||||||||||| |||| ||||| |||||||| ||| ||||||| ||| ||||||| || ||||||||||||| |||||||||||    
T  45397404 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 10678149 - 10678210
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgta 62  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||  ||||||||||    
T  10678149 atgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta 10678210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 19386562 - 19386670
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatg-----gggtgtacaatagggtgtatgattaaagggtgttcatgta 95  Q
    |||||||||||||||| ||||||||||||| ||| |||||  | | |||||||||     |   ||| ||||||||||||||||||||||||||||||||    
T  19386562 atgaaagagaaagtatagttgtgagatgaatttatcaaaacattcttaatgcatgaaagagaaagtataatagggtgtatgattaaagggtgttcatgta 19386661  T
Q  96 acattttcc 104  Q
    |||||||||    
T  19386662 acattttcc 19386670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 40528635 - 40528735
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacattttc 103  Q
    |||||||||| |||||||||||| || ||| |||||||||||||||  |||||||||||||| |||| | || || ||||||||||||||||  ||||||    
T  40528635 aagagaaagtgtggttgtgagataaatttatcaaaatgtccctaatatatggggtgtacaatggggtttgtgaataaaagggtgttcatgtattattttc 40528734  T
Q  104 c 104  Q
    |    
T  40528735 c 40528735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 16230314 - 16230245
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||||||||||| || | ||||||||||||| | ||||||||||| | ||||||||| |||||||    
T  16230314 catttttaatagcatttatctagaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtga 16230245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 10678204 - 10678240
Alignment:
Q  68 gggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||||||||||||||| |||||||||||||||||    
T  10678204 gggtgtatgattaaagggtattcatgtaacattttcc 10678240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 32328818 - 32328867
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcat 54  Q
    |||||||||||| |||||||||| || |||||||||| | ||||||||||    
T  32328818 aagagaaagtatagttgtgagataaacttaccaaaatattcctaatgcat 32328867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 6813914 - 6813846
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||||||| ||| || | ||||||||||||| | | ||||||||| | ||||||||| ||||||    
T  6813914 catttttaatagcttttatccataaacgctattaaaattgcgctattaaaagccaaaattgtggtagtg 6813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 43114660 - 43114557
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43114660 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 43114561  T
Q  101 ttcc 104  Q
    ||||    
T  43114560 ttcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 11825651 - 11825752
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11825651 atgaaagagaaagtatgattgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 11825750  T
Q  101 tt 102  Q
    ||    
T  11825751 tt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 41281971 - 41282072
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41281971 atgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 41282070  T
Q  101 tt 102  Q
    ||    
T  41282071 tt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 12415457 - 12415560
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12415457 atgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatt 12415556  T
Q  101 ttcc 104  Q
    ||||    
T  12415557 ttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 12427517 - 12427620
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12427517 atgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatt 12427616  T
Q  101 ttcc 104  Q
    ||||    
T  12427617 ttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 16804071 - 16803968
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16804071 atgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacatt 16803972  T
Q  101 ttcc 104  Q
    ||||    
T  16803971 ttcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 16843353 - 16843250
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16843353 atgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacatt 16843254  T
Q  101 ttcc 104  Q
    ||||    
T  16843253 ttcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 966831 - 966934
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||| |||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  966831 atgaaagagaaagtatgtttgtgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 966930  T
Q  101 ttcc 104  Q
    ||||    
T  966931 ttcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 18491808 - 18491705
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||| |||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18491808 atgaaagagtaagtatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 18491709  T
Q  101 ttcc 104  Q
    ||||    
T  18491708 ttcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 34895738 - 34895841
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |    
T  34895738 atgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacact 34895837  T
Q  101 ttcc 104  Q
    ||||    
T  34895838 ttcc 34895841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 6518484 - 6518566
Alignment:
Q  19 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  6518484 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 4299420 - 4299518
Alignment:
Q  4 aaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||||| ||||||| |||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  4299420 aaagagtaagtatgattgtgagatgaatttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 34817777 - 34817875
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 103  Q
    |||||||||| ||||||||||||||| |||||||||||| | || |||||||||||||||||  ||||| ||| |||||||||||||||||||||||||    
T  34817777 aagagaaagtgtggttgtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 1750513 - 1750414
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||||| |||||||| ||| ||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  1750513 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 30838731 - 30838632
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||| | ||||  | ||||||||||||||||||||||||||    
T  30838731 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 30838632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4451947 - 4452026
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgatta 80  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||  ||||||||||| | ||||||||||    
T  4451947 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgtatgatta 4452026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 12302254 - 12302353
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||||| |||||||| ||| ||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  12302254 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 12302353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 16096846 - 16096747
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| |||||||||||| || | |||||||| |||||||| ||||||||||| ||| ||||||| || ||||||||||||||||||||||||||    
T  16096846 aagataaagtgtggttgtgagattaactcaccaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 19047256 - 19047158
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  19047256 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 19047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 12531660 - 12531744
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggt 86  Q
    |||||||||||||||||||||||||||||| ||||||||| | || |||||| || |||||||||| |||||||||||||||||||    
T  12531660 atgaaagagaaagtatggttgtgagatgaatttaccaaaa-gcccataatgcttgaggtgtacaattgggtgtatgattaaagggt 12531744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 4764727 - 4764826
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |   |||| ||||||||||||||||||||||| || |||| |||||| ||||||||||||||    
T  4764727 aagataaagtgtggttgtgagatgaatttaccaaaatatttataatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacattttcc 4764826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 13780736 - 13780835
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||||||||| ||||||||||||||| ||| |||||| ||||||||| ||||||||||||||  ||||| ||| ||||  ||||| ||||||||||||||    
T  13780736 aagagaaagtgtggttgtgagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacattttcc 13780835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 14285779 - 14285676
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||  | ||||||||| |||||||||| ||  ||||  || ||||||||||||||||||||||||||||||||||  ||||| |||    
T  14285779 atgaaagagaaagtatgactctgagatgaatttaccaaaatatctttaatatatagggtgtacaatagggtgtatgattaaagggtgtttgtgtaatatt 14285680  T
Q  101 ttcc 104  Q
    ||||    
T  14285679 ttcc 14285676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 43490402 - 43490499
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||| ||||||||| |||||||||| |||||||| ||| | ||||||||| || |||| || ||||||||||||||||||||||||    
T  43490402 aagataaagtgtggttatgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 43490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 43335764 - 43335863
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| | ||||||||||||| |||||||||| |||||||| |||||| ||||||||  |||||| || |||| | ||||||| |||||||||||    
T  43335764 aagataaagtgtagttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcc 43335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 8896587 - 8896681
Alignment:
Q  8 agaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    ||||||| || |||||||||||| |||||||||| | |||| || || ||||||||||| |  ||| ||| ||||||||||||||||||||||||    
T  8896587 agaaagtgtgattgtgagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttt 8896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 12630207 - 12630289
Alignment:
Q  117 aggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||  ||| |||||||||||||| || || ||||||||||||||| | ||||||||||| ||||||||||| ||||||    
T  12630207 aggtctataatttgcatttttaatagcacttatccaaaaacgctattaaaattgtgctattaaaagtcaaaattgtggtagtg 12630289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 33737086 - 33737170
Alignment:
Q  116 taggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    |||||||||  ||| ||||||||||||||||| |  | ||||||||||||| | ||||||||||||| ||||||||| |||||||    
T  33737086 taggtctataatttgcatttttaatagcatttatgtagaaacgctattaaaattgtgctattaaaggccaaaattgtggtagtga 33737170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 42026865 - 42026767
Alignment:
Q  8 agaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaa--gggtgttcatgtaacattttcc 104  Q
    ||||||| | ||||||||||||| || ||||||| ||||||||||  ||| |||||||| |  ||||||| ||||  ||||||||||||||||||||||    
T  42026865 agaaagtgtagttgtgagatgaatttgccaaaatatccctaatgcgcgggatgtacaatggaatgtatgaataaattgggtgttcatgtaacattttcc 42026767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 7070504 - 7070418
Alignment:
Q  16 tggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    ||||||| ||||||| ||| ||||||||||| |||  |||| |  |||||| || ||||||| ||||||||||||||||||||||||    
T  7070504 tggttgtaagatgaatttatcaaaatgtccccaataaatggaggttacaatgggatgtatgaataaagggtgttcatgtaacatttt 7070418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 33229381 - 33229303
Alignment:
Q  25 gatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 102  Q
    |||||| |||||||||| |||||||| |||||||||||||||  |||||| | || |||||||||||||||| ||||||    
T  33229381 gatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttt 33229303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 42849864 - 42849916
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgta 62  Q
    ||||| ||||||||||||||| ||| |||||| |||||||| |||||||||||    
T  42849864 aaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgta 42849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 5562574 - 5562640
Alignment:
Q  133 tttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||||| ||| |  ||||||||||||||| | | ||||||||| | ||||||||||||||||    
T  5562574 tttttaatagcgtttatgtaaaaacgctattaaatttgcgctattaaaagccaaaattgtagtagtg 5562640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 42849910 - 42849946
Alignment:
Q  68 gggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||| || ||||||||||||||||||||||||||    
T  42849910 gggtgtaggaataaagggtgttcatgtaacattttcc 42849946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 44112780 - 44112677
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112780 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 44112681  T
Q  101 ttcc 104  Q
    ||||    
T  44112680 ttcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 41065254 - 41065153
Alignment:
Q  3 gaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41065254 gaaagagaaagtatggttgtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacatttt 41065155  T
Q  103 cc 104  Q
    ||    
T  41065154 cc 41065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 45427742 - 45427845
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||    
T  45427742 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacatt 45427841  T
Q  101 ttcc 104  Q
    ||||    
T  45427842 ttcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 48119731 - 48119628
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48119731 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 48119632  T
Q  101 ttcc 104  Q
    ||||    
T  48119631 ttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35003397 - 35003294
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35003397 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 35003298  T
Q  101 ttcc 104  Q
    ||||    
T  35003297 ttcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38113192 - 38113295
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||| |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38113192 atgaaagagtaagtatggttgtgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacatt 38113291  T
Q  101 ttcc 104  Q
    ||||    
T  38113292 ttcc 38113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 38336021 - 38335918
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  38336021 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacatt 38335922  T
Q  101 ttcc 104  Q
    ||||    
T  38335921 ttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 46168486 - 46168383
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||    
T  46168486 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacatt 46168387  T
Q  101 ttcc 104  Q
    ||||    
T  46168386 ttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 45639729 - 45639832
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||| |||||||||||| |||||||||| ||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  45639729 atgaaagagaaagtatgattgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacatt 45639828  T
Q  101 ttcc 104  Q
    ||||    
T  45639829 ttcc 45639832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 45705928 - 45705825
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||||||||  |||||||||||||||||||||| |||||||    
T  45705928 atgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataacatt 45705829  T
Q  101 ttcc 104  Q
    ||||    
T  45705828 ttcc 45705825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35000110 - 35000213
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||| || ||| ||||||||||||||| ||||  || |||||||| ||||||||||||| |||||||||||||||||    
T  35000110 atgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaacatt 35000209  T
Q  101 ttcc 104  Q
    ||||    
T  35000210 ttcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 43571087 - 43571186
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  43571087 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 5489875 - 5489776
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  5489875 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 5489776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26585565 - 26585462
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||| ||| |||||||| |||| ||||| ||| |||||||||||||||||||||  ||||||||||||||  ||||||| |||||||    
T  26585565 atgaaagagaaagtatgattgcgagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaacatt 26585466  T
Q  101 ttcc 104  Q
    ||||    
T  26585465 ttcc 26585462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 14427404 - 14427347
Alignment:
Q  47 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14427404 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 37814877 - 37814778
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||| ||||| |||||||||| ||| |||| |||||||||||||||  | ||||||| ||||||||||| ||||||||||||||    
T  37814877 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 48498963 - 48499062
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  48498963 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 48499062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 23989524 - 23989624
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacattttc 103  Q
    |||| ||||| |||||||||||| || |||||||||| |||||||| ||| |||| |||||| | ||||||| || ||||||||||||||||||||||||    
T  23989524 aagataaagtgtggttgtgagataaatttaccaaaatatccctaatacatagggtatacaattgagtgtatgaataaaagggtgttcatgtaacattttc 23989623  T
Q  104 c 104  Q
    |    
T  23989624 c 23989624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 2497568 - 2497660
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||  |||||||||||||| |  ||||||| |||| |||||| ||||||||||||    
T  2497568 aaagtgtggttgtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttt 2497660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 750306 - 750405
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||| ||||||||| ||| |||||| ||||| || ||||||||||||||| ||||||| ||   ||||||||||| ||||||||||||    
T  750306 aagataaagtgtggttttgagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcc 750405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 24769500 - 24769599
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||| | ||| |||||||||| |||||||| ||||||||||||||| | |||||  | |||| |||||||||| ||||||||||    
T  24769500 aagataaagtgtggttgtgataagaacttaccaaaatatccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacattttcc 24769599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 4401427 - 4401329
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| |||||||||| || ||||| |||||||||||||||   ||||| | || |||| ||||||||||| ||||||    
T  4401427 aagataaagtgtggttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcatttt 4401329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 7447924 - 7447828
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||  |||| |||||| |||||||| || |||| || |||||| |||||||||||||||||    
T  7447924 aagataaagtgtggttgtgagatgaacttatcaaaatatctgtaatacatggg-tgtacaatgggatgtaggaataaaggatgttcatgtaacatttt 7447828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 50448272 - 50448360
Alignment:
Q  16 tggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||| ||||||| |||| ||||| |||||||| |||  |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  50448272 tggttgtaagatgaacttacaaaaatatccctaatacataaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 50448360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 17176120 - 17176038
Alignment:
Q  116 taggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagt 198  Q
    ||||||||||  || ||||||||||||||||| || | ||||||||||||| |  |||||||||| | ||||||||| |||||    
T  17176120 taggtctatgagttgcatttttaatagcatttatccagaaacgctattaaaattatgctattaaaagccaaaattgtggtagt 17176038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 29706027 - 29706076
Alignment:
Q  151 aaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||| |||||||||||| |||||||||||| | ||||||||||||||||    
T  29706027 aaaaagcgctattaaagttgtgctattaaagctaaaaattgtagtagtga 29706076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 44078339 - 44078270
Alignment:
Q  227 gataatggaaatttggcatgatgcaaagacaataggtagaggtaccaaagtgtgcaggttatacatgtta 296  Q
    |||||||| ||||| ||||||| |||||| |||| || |||||||||||||||   | ||||||||||||    
T  44078339 gataatgggaatttcgcatgatacaaagataatatgtggaggtaccaaagtgtatggtttatacatgtta 44078270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 4888137 - 4888085
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgta 62  Q
    ||||| |||||||||||| || |||||||||| |||||||| |||||| ||||    
T  4888137 aaagtgtggttgtgagataaacttaccaaaatatccctaatacatgggatgta 4888085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 9434227 - 9434124
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9434227 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacatt 9434128  T
Q  101 ttcc 104  Q
    ||||    
T  9434127 ttcc 9434124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 10457889 - 10457992
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10457889 atgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacatt 10457988  T
Q  101 ttcc 104  Q
    ||||    
T  10457989 ttcc 10457992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 34791932 - 34791829
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||    
T  34791932 atgaaagagaaagtatggttgtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacatt 34791833  T
Q  101 ttcc 104  Q
    ||||    
T  34791832 ttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 51757696 - 51757593
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||| |||    
T  51757696 atgaaagagaaagtatggttgtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaatatt 51757597  T
Q  101 ttcc 104  Q
    ||||    
T  51757596 ttcc 51757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4190262 - 4190365
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||| || ||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  4190262 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 4190361  T
Q  101 ttcc 104  Q
    ||||    
T  4190362 ttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 25996371 - 25996268
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| ||||  ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  25996371 atgaaagagaaaatatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacatt 25996272  T
Q  101 ttcc 104  Q
    ||||    
T  25996271 ttcc 25996268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 52627974 - 52628077
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||| |||||||||||| |||||||||| | | ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||    
T  52627974 atgaaagagaaagtatgattgtgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaacatt 52628073  T
Q  101 ttcc 104  Q
    ||||    
T  52628074 ttcc 52628077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 45126934 - 45127028
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||| || ||||||| ||||||||||| ||||||||||||||    
T  45126934 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 45127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 42100776 - 42100688
Alignment:
Q  16 tggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  42100776 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 42100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 40808964 - 40808865
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||| || |||| |||||| ||||||||||||||    
T  40808964 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcc 40808865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 46941152 - 46941053
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||  | |||| || ||||||||||||||||||||||||||    
T  46941152 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcc 46941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 54237195 - 54237097
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || |||| || |||||||||||||||||||||||||    
T  54237195 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 24688403 - 24688502
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| | |||||  | ||||||||||||||||||||||||||    
T  24688403 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 24688502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 25413780 - 25413681
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||||| |||||||| |||  |||||||||| ||||||| || ||||||||||||||||||||||||||    
T  25413780 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 36150229 - 36150130
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| ||||| || ||| ||||||| ||| |||||||||| |||||||| |||||||||||||||||    
T  36150229 aagataaagtgtggttgtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 54246149 - 54246248
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||||| || ||||| ||| ||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  54246149 aagataaagtgtggttgtgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 40480848 - 40480750
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| || |||||||| |||  ||||| |||||||||||||||||||||||||    
T  40480848 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 42394420 - 42394518
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  42394420 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 42394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 27748662 - 27748565
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||||| ||||||||||||| |||||||||| |||||||| |||  |||||| |||  ||||||||| |||| |||||||||||||||||||    
T  27748662 aagataaagtattgttgtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 53581859 - 53581956
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| ||| |||||| |||||||| ||| || |||||||| | |||||||| ||||| ||||||||||||||||||    
T  53581859 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttt 53581956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 53273684 - 53273784
Alignment:
Q  4 aaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 103  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||| |||||| ||||||||  ||| || || |||| | ||||||| ||||||||||    
T  53273684 aaagataaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttc 53273783  T
Q  104 c 104  Q
    |    
T  53273784 c 53273784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 47191027 - 47191125
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| ||| |||||| || ||||| |||||| ||||||||  |||||| || ||||||||||||||||||||||||||    
T  47191027 aagataaagtgtggttgtgagatgaacttatcaaaatatctctaatacatggg-tgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 47191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 51249407 - 51249323
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgtt 89  Q
    |||||||||| ||||||||||||||| |||||||||| ||| ||||||||| |||||| ||| || ||  ||| |||||||||||    
T  51249407 aagagaaagtgtggttgtgagatgaatttaccaaaatatccttaatgcatgaggtgtataatgggttgggtgaataaagggtgtt 51249323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 27356633 - 27356700
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagt 198  Q
    ||||||||||||| ||||  | | |||||||||||||||||||||||||| | |||||||||||||||    
T  27356633 catttttaatagcgttttcgagataacgctattaaagtggtgctattaaaagacaaaattgtagtagt 27356700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 15103127 - 15103195
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||||||||||| || | ||||||||||||| | ||||||||||| | ||||||||| ||||||    
T  15103127 catttttaatagcatttatccagaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtg 15103195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 29558249 - 29558330
Alignment:
Q  19 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||| ||||||| || | ||||||  || |||||||||||  | ||||||| |||||||||||||| |||||||    
T  29558249 ttgtgagatgaatttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 509
Target Start/End: Complemental strand, 5301192 - 5301140
Alignment:
Q  457 ggttgagagaggaaatgagagaaattgaggatttcttttggagagcaattgaa 509  Q
    |||||||||||||||||||||||||| |||||| ||||| | ||| |||||||    
T  5301192 ggttgagagaggaaatgagagaaattaaggattgctttttgtgagtaattgaa 5301140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 20129523 - 20129440
Alignment:
Q  117 aggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||  ||| ||||||||||||||||| || | ||| ||||||||| | ||||||||||| | ||||||| | |||||||    
T  20129523 aggtctataatttgcatttttaatagcatttatctataaaagctattaaaattgtgctattaaaagccaaaattatggtagtga 20129440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19148882 - 19148822
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgt 61  Q
    ||||||| |||||| || ||||||||| || |||| |||||||||||||| ||| ||||||    
T  19148882 atgaaagtgaaagtgtgattgtgagataaatttactaaaatgtccctaatacatagggtgt 19148822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 9e-47; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40237022 - 40236919
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40237022 atgaaagagaaaatatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacatt 40236923  T
Q  101 ttcc 104  Q
    ||||    
T  40236922 ttcc 40236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31513390 - 31513287
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  31513390 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacatt 31513291  T
Q  101 ttcc 104  Q
    ||||    
T  31513290 ttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31408630 - 31408732
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  31408630 atgaaagagaaagtatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacatt 31408729  T
Q  101 ttc 103  Q
    |||    
T  31408730 ttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 27535228 - 27535331
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||  |||  ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  27535228 atgaaagagaaagtatagttgtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaacatt 27535327  T
Q  101 ttcc 104  Q
    ||||    
T  27535328 ttcc 27535331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 33384974 - 33384870
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaata-gggtgtatgattaaagggtgttcatgtaacat 99  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||||||| | ||||||||||||||    
T  33384974 atgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaacat 33384875  T
Q  100 tttcc 104  Q
    |||||    
T  33384874 tttcc 33384870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 10573848 - 10573751
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| |||||||||| | |||||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  10573848 aagataaagtgtggttgtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 24001013 - 24001112
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  24001013 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 24001112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 42538432 - 42538531
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  42538432 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 42538531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 4638200 - 4638297
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||||||||||||||||||| |||||||||| ||| ||||  |||||||||||||| | |||||||| |||| |||||||||||||||||||    
T  4638200 aagataaagtatggttgtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 24280597 - 24280696
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||||||||| || |||||||||||| |||||||||| |  ||| |||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||    
T  24280597 aagagaaagtgtgattgtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 35069820 - 35069721
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||| ||||||||||  |||||| || ||||| ||||||||||||||||||||    
T  35069820 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcc 35069721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 43343625 - 43343722
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||  | |||| | |||||||||||||||||    
T  43343625 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 44416935 - 44417032
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||  | |||| | |||||||||||||||||    
T  44416935 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 44417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 9216389 - 9216302
Alignment:
Q  16 tggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||||||||||| |||||||||| || |||||||||||| ||||||||||| | || || ||||||||||||||||||||||||||    
T  9216389 tggttgtgagatgaacttaccaaaatatctctaatgcatggg-tgtacaataggatataggaataaagggtgttcatgtaacattttcc 9216302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 44326272 - 44326180
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    ||||| ||||||||||||||| |||||||||| ||||||||  ||| |||||||||| || ||||||| ||||||||||| ||||||||||||    
T  44326272 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 44326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 5015494 - 5015395
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  5015494 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 5015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 5810925 - 5811024
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||||||||  || ||||||||||| ||||||| || ||||||||| ||||||||||||||||    
T  5810925 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 26898408 - 26898499
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 101  Q
    ||||| ||||||| ||||||| |||||||||| |||||||| |||||  |||||||| |||||||||| |||| ||||||||||||||||||    
T  26898408 aaagtgtggttgtaagatgaacttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 42972940 - 42972852
Alignment:
Q  16 tggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||||||||||| |||||||||| |||||||| |||| |||||||||| | ||||| || |||||| |||||| ||||||||||||    
T  42972940 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 39998475 - 39998408
Alignment:
Q  37 aaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttcc 39998408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 43317542 - 43317443
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||| |||| || |||||||||||| ||| |||||| ||||||| |||| || ||||||||  ||||||||| |||| |||||||||||||||||||||    
T  43317542 aagagtaagtgtgattgtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 43317443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 41861775 - 41861674
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtcccta--atgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| |||||||||||| || |||||||||| || |||  || ||| ||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  41861775 aagataaagtgtggttgtgagataaacttaccaaaatatctctataatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacatttt 41861676  T
Q  103 cc 104  Q
    ||    
T  41861675 cc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 5194232 - 5194331
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||| |||| || |||||||||||| ||| |||||| ||| |||  ||| |||||||||||  ||||||||| |||| |||||||||||||||||||||    
T  5194232 aagagtaagtgtgattgtgagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 5194331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 45326119 - 45326020
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| || |||||||||||| |||||||||| ||||||||  ||||||||||||||  | ||||||| |||| |||||| |||||||| |||||    
T  45326119 aagataaagtgtgattgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaacactttcc 45326020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 24501700 - 24501782
Alignment:
Q  117 aggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||  ||| ||||||||||||||||| || ||||||||||||||| | ||||||||||| | ||||||||| ||||||    
T  24501700 aggtctataatttgcatttttaatagcatttatccaaaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtg 24501782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 32029818 - 32029908
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgta 95  Q
    |||| ||||| ||||||| ||||||| |||||||||| |||||||| ||||||||||||||| ||||||| || ||||  ||||| |||||    
T  32029818 aagataaagtgtggttgttagatgaatttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaaaagtgtttatgta 32029908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 23925792 - 23925875
Alignment:
Q  117 aggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||| ||| ||||||| ||||||||| || | ||||||||||||| | ||||||||||| | ||||||||| |||||||    
T  23925792 aggtctatgatttgcatttttcatagcatttatccataaacgctattaaaattgtgctattaaaagccaaaattgtggtagtga 23925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 27393261 - 27393344
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgt 88  Q
    |||| ||||| ||||||||||||||| |||| ||||| |||||||| ||| | |||||||||||| |||| || ||||||||||    
T  27393261 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagagtgtacaataggatgtaggaataaagggtgt 27393344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 16180358 - 16180454
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| |||||||||| |   |||| | ||||||||||||| ||||||| || |||| |||||| ||||||||||||    
T  16180358 aagataaagtgtggttgtgagatgaatttaccaaaatatttataatacgtggggtgtacaat-gggtgtaggaataaatggtgttgatgtaacatttt 16180454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 34144243 - 34144310
Alignment:
Q  133 tttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||||||||||  | ||| ||||||| |||| |||||||||||  ||||||||||||||||||    
T  34144243 tttttaatagcattttaaacaaagcgctattgaagtagtgctattaaaactcaaaattgtagtagtga 34144310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 27289104 - 27289173
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||||||||||| || ||||| | ||||||| | ||||||||||| | ||||||||| |||||||    
T  27289104 catttttaatagcatttatccaaaaatgttattaaaattgtgctattaaaagccaaaattgtggtagtga 27289173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 38160580 - 38160641
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaat 66  Q
    |||| ||||| | ||||||||||||| |||| ||||| |||||||| |||||||||||||||    
T  38160580 aagataaagtgtagttgtgagatgaagttactaaaatatccctaatacatggggtgtacaat 38160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 508
Target Start/End: Original strand, 15965835 - 15965933
Alignment:
Q  410 gttggaaaatacattgtaaacatcttagggagtgattataata-agtaggttgagagaggaaatgagagaaattgaggatttcttttggagagcaattga 508  Q
    ||||| ||| ||||||| |||| ||| |||| ||||||| ||  ||| |||| |||||||||| ||||||||||| ||||||| ||||||||| ||||||    
T  15965835 gttgggaaacacattgtgaacaccttggggaatgattatcattgagtgggtttagagaggaaaggagagaaattggggatttc-tttggagagaaattga 15965933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 22938925 - 22938857
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||||||| ||| || ||||| ||||||||| | ||||||||||| | | ||||||| ||||||    
T  22938925 catttttaatagcgtttatccaaaaatgctattaaaattgtgctattaaaagcccaaattgtggtagtg 22938857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 47279745 - 47279797
Alignment:
Q  52 catggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||||||||||| || ||||||| |||||||| || |||||| |||||||    
T  47279745 catggggtgtacaatgggatgtatgaataaagggtatttatgtaatattttcc 47279797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 17619149 - 17619252
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17619149 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacatt 17619248  T
Q  101 ttcc 104  Q
    ||||    
T  17619249 ttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 712063 - 711960
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||| |||||||||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  712063 atgaaagagaaagtatgtttgtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 711964  T
Q  101 ttcc 104  Q
    ||||    
T  711963 ttcc 711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32728460 - 32728357
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32728460 atgaaagagaaagtatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacatt 32728361  T
Q  101 ttcc 104  Q
    ||||    
T  32728360 ttcc 32728357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 55272373 - 55272476
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  55272373 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacatt 55272472  T
Q  101 ttcc 104  Q
    ||||    
T  55272473 ttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 48435576 - 48435679
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |    
T  48435576 atgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacact 48435675  T
Q  101 ttcc 104  Q
    ||||    
T  48435676 ttcc 48435679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 960867 - 960970
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||| | || | ||||||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||    
T  960867 atgaaagagaaagtacgattataagatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacatt 960966  T
Q  101 ttcc 104  Q
    ||||    
T  960967 ttcc 960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 3756244 - 3756344
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||| |||||||| ||||||||| || |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3756244 atgaaaga-aaagtatgattgtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 3756342  T
Q  101 tt 102  Q
    ||    
T  3756343 tt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 28988572 - 28988473
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||||||||| ||||| ||||||||| ||| ||||||||||||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  28988572 aagagaaagtgtggttatgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 35037106 - 35037007
Alignment:
Q  3 gaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||||| ||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  35037106 gaaagaaaaaatatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttt 35037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 46827703 - 46827806
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||| |||| ||||||||| || ||||||||| || | |||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  46827703 atgaaagagaaaatatgtttgtgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacatt 46827802  T
Q  101 ttcc 104  Q
    ||||    
T  46827803 ttcc 46827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 38851616 - 38851515
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||| || | |||||||||||||| | |||||||||||||    
T  38851616 atgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaacatt 38851517  T
Q  101 tt 102  Q
    ||    
T  38851516 tt 38851515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 27893843 - 27893940
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  27893843 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 33703240 - 33703141
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||| | ||||  | ||||||||||||||||||||||||||    
T  33703240 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 33703141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 27864658 - 27864564
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||| || ||||||| |||| |||||| ||||||||||||||    
T  27864658 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcc 27864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 1771278 - 1771366
Alignment:
Q  16 tggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||||||||||| ||| |||||| || ||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  1771278 tggttgtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 55966358 - 55966446
Alignment:
Q  16 tggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||||||||||| |||||||||| |||||||| |||||| |||||||| || ||||||| ||||||||||| ||||||||||||||    
T  55966358 tggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 55966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 28982835 - 28982922
Alignment:
Q  17 ggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||||||||||||| |||||||||| ||||||||  ||||| ||||||||||||||||  | ||||||||||||||||||||||||||    
T  28982835 ggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacattttcc 28982922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 41878505 - 41878407
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 103  Q
    ||||||| || ||||||||||||||| ||| |||||| ||||||||| || |||||||||||  ||||||||| ||||| |||||||||||||||||||    
T  41878505 aagagaaggtttggttgtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 41848070 - 41847970
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||||||||| |||||||| |||||| || |||||||||| |||||||||||||||||||||  ||||| |||  ||||| ||||| |||||||||||||    
T  41848070 aagagaaagtgtggttgtgcgatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacattttcc 41847971  T
Q  105 g 105  Q
    |    
T  41847970 g 41847970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 23036079 - 23035980
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||||||||  || ||||||||||||||||||| || ||||||  ||||||||||||||||||    
T  23036079 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttcc 23035980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 25051792 - 25051693
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| || |||||||||||| |||||||||| |||||||| ||| ||||||||||| ||||||| || ||||| |||||||||| |||||||||    
T  25051792 aagataaagtgtgattgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcc 25051693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 27550408 - 27550309
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||| ||||||| |||||||||| |||||||| |||| |||||||||| | |||||  | ||||||||||||||||||||||||||    
T  27550408 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19880057 - 19879987
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggt 71  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| ||||  |||||||||||||||||||    
T  19880057 atgaaagagaaagtatgattgtgagatgaatttaccaaaatgtccataatatatggggtgtacaatagggt 19879987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 48463456 - 48463550
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||||||||||||||||| |||||||||| |||||||| |||||| ||||||||    ||||||| |||| |||||| ||||||||||||||    
T  48463456 aaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttcc 48463550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 41327544 - 41327641
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||||||||| ||| ||||||||||| |||||||||||||| || |||||  |||||||||| |||||| ||| ||||||||||  ||||||||||||    
T  41327544 aagagaaagtgtggatgtgagatgaatttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttt 41327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 49229684 - 49229764
Alignment:
Q  24 agatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||| |||||| ||| ||| |||||||||  ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttcc 49229764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 35017831 - 35017733
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| ||||| || |||||||||||||||  | | || || ||||||||||||||||||||||||||    
T  35017831 aagataaagtgtggttgtgagatgaacttaccaaaatatccct-atacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcc 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 43514698 - 43514784
Alignment:
Q  16 tggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    ||||||||||||||| ||||||||||  ||||||| ||||  ||||||||| | ||||| || ||||||||||||||||||||||||    
T  43514698 tggttgtgagatgaacttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 43949802 - 43949900
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||  |||| | | || |||||||||||||||| ||||||    
T  43949802 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcatttt 43949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 12497055 - 12496956
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| || |||| ||||||| |||||||||| || ||||| |||||| |||||||| | ||||| || |||||||||||||| |||||||||||    
T  12497055 aagataaagtgtgattgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 12496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 27316714 - 27316813
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||| ||||||||| |||||||||| ||| |||| ||||||||||| |||  |||||| || |||||||||||| | |||||||||||    
T  27316714 aagataaagtgtggttatgagatgaacttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacattttcc 27316813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 45490314 - 45490413
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||| | |||||||| |||| |||||||||| || ||||| | ||||  ||||||||||||||||||||    
T  45490314 aagataaagtgtggttgtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacattttcc 45490413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 39631200 - 39631102
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||| ||||||||||  |||||| | || |||||| ||||||||| ||||||    
T  39631200 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcatttt 39631102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 49947174 - 49947256
Alignment:
Q  117 aggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||  ||| ||||||||||||||||| || ||||||||||||||| | ||||||||||| | ||||||||| ||||||    
T  49947174 aggtctataatttgcatttttaatagcatttatctaaaaacgctattaaaattgtgctattaaaagacaaaattgtggtagtg 49947256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 31681001 - 31680904
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| ||||||||||||||| |||||||||| ||||||||  | |||||||||||| |  ||||||| |||| |||||| | ||||||||||    
T  31681001 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatacggggtgtacaatggaatgtatgaataaatggtgtttacgtaacatttt 31680904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36004113 - 36004174
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgta 62  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||  ||||||||||    
T  36004113 atgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatatatggggtgta 36004174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 23204779 - 23204875
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 101  Q
    |||| ||||| ||||||||| ||||| |||| ||||| |||||||| ||| || |||||||| || |||| || ||||| |||||||||||||||||    
T  23204779 aagataaagtgtggttgtgacatgaacttacaaaaatatccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 36004168 - 36004204
Alignment:
Q  68 gggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||||||||||||||||| |||||||||||||||||    
T  36004168 gggtgtatgattaaagggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 21687105 - 21687006
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||||||||| ||||||||| |||| ||||| |  ||||| |||  | |||| ||| |||||||  | |||||| |||||||||||||||||||    
T  21687105 aagataaagtatggttatgagatgaacttactaaaatatttctaatacataagatgtataatggggtgtaaaaataaaggatgttcatgtaacattttcc 21687006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 37941500 - 37941439
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgt 192  Q
    ||||||||||||||||| || | ||||||||||||| |  |||||||||| | |||||||||    
T  37941500 catttttaatagcatttatccagaaacgctattaaaattatgctattaaaagccaaaattgt 37941439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 17784280 - 17784328
Alignment:
Q  152 aaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    |||| |||||| ||||||| ||||||| | |||||||||||||||||||    
T  17784280 aaaagcgctataaaagtggcgctattatatgtcaaaattgtagtagtga 17784328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35453 - 35556
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  35453 atgaaagagaaagtatggttgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacatt 35552  T
Q  101 ttcc 104  Q
    ||||    
T  35553 ttcc 35556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 33242506 - 33242403
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  33242506 atgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacatt 33242407  T
Q  101 ttcc 104  Q
    ||||    
T  33242406 ttcc 33242403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 27441645 - 27441544
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| |||| ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  27441645 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatt 27441546  T
Q  101 tt 102  Q
    ||    
T  27441545 tt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 33254013 - 33253913
Alignment:
Q  4 aaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 103  Q
    ||||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  33254013 aaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttc 33253914  T
Q  104 c 104  Q
    |    
T  33253913 c 33253913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 13743222 - 13743321
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||| || ||||||| |||| |||||||||||||||||||||    
T  13743222 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13743321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 13748722 - 13748821
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||| || ||||||| |||| |||||||||||||||||||||    
T  13748722 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13748821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 24203993 - 24204085
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    ||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||| || |||| |||||||||||||||||||    
T  24203993 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 7273336 - 7273435
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| || |||||||||||| |||||||||| || ||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||    
T  7273336 aagataaagtgtgattgtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 9698334 - 9698433
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  9698334 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 9698433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 26670010 - 26670109
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||| ||||||||||  |||||| || ||||||||||||||||||||||||||    
T  26670010 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 26670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 3213499 - 3213400
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||||||||||||| ||||| |||||||||| ||| |||| |||||||||||||||  | ||||||| ||||||||||| ||||||||||||||    
T  3213499 aagataaagtatggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 3213400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 26466898 - 26466799
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| ||||||||||  ||||||| ||||| ||||||||| ||||||| || ||||||||||| ||||||||||||||    
T  26466898 aagataaagtgtggttgtgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcc 26466799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 30014442 - 30014343
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||||||||||||||||||| |||||||||| | |||||| |||||| |||| ||| || |||| || ||||||||||||||||||||||||||    
T  30014442 aagataaagtatggttgtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacattttcc 30014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31109219 - 31109322
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||| | |||| || || |||| ||| |||||| |||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  31109219 atgaaagagaaaatgtggtcgtaagttgaatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaacatt 31109318  T
Q  101 ttcc 104  Q
    ||||    
T  31109319 ttcc 31109322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 7292846 - 7292747
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||| |||  ||||||||| |||| ||||||| |||||||||||||    
T  7292846 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcc 7292747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 7367643 - 7367549
Alignment:
Q  10 aaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    ||||| ||||||||||||||| |||||||||| |||||||| |||||| ||||||||  ||||||||| |||| | ||||||| |||||||||||    
T  7367643 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcc 7367549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 21280028 - 21279929
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||||| ||| |||| |  ||||  | ||||||||||||||||||||||||||    
T  21280028 aagataaagtgtggttgtgagatgaatttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacattttcc 21279929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 30736081 - 30735984
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 102  Q
    |||| ||||| || |||||||||||| |||||||||| || ||||| |||| |||||||||| ||||||| || ||||  ||||||||||||||||||    
T  30736081 aagataaagtgtgattgtgagatgaacttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttt 30735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 21293678 - 21293777
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||| ||||| |||||||||| ||| |||| ||||||||||||| |    ||||||| ||||||||||| ||||||||||||||    
T  21293678 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcc 21293777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 33292456 - 33292525
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||||||||||| || ||||||||||||||| | ||||||||||| | ||||||||| |||||||    
T  33292456 catttttaatagcatttatccaaaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtga 33292525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 16729739 - 16729822
Alignment:
Q  117 aggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||  ||| ||||||||||||| ||| || ||||||||||||||| | ||||||||||| | ||||||||| |||||||    
T  16729739 aggtctataatttgcatttttaatagcttttatccaaaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtga 16729822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 22474537 - 22474621
Alignment:
Q  116 taggtctatgttttccatttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    |||||||||  ||| ||||||||||||| ||| |  | ||||||||||||| | ||||||||||| | ||||||||| |||||||    
T  22474537 taggtctataatttacatttttaatagcttttatgcagaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtga 22474621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 28247665 - 28247598
Alignment:
Q  133 tttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||||||||| |  | ||||||||||||| | ||||||||||| |  ||||||||||||||||    
T  28247665 tttttaatagcatttatatagaaacgctattaaaattgtgctattaaaagctaaaattgtagtagtga 28247598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 20511901 - 20511840
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgt 192  Q
    ||||||||||||||||| |  ||||||||||||||| |  |||||||||| | |||||||||    
T  20511901 catttttaatagcatttattcaaaaacgctattaaaattatgctattaaaagccaaaattgt 20511840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 45716 - 45817
Alignment:
Q  1 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| |||| ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  45716 atgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatt 45815  T
Q  101 tt 102  Q
    ||    
T  45816 tt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 11350 - 11251
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| ||||||||  |||||||||||||| |||||||||| ||||| |||||||||| |||||||||    
T  11350 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcc 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 784 - 685
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||| ||||||||||  |||||| || ||||||||||||||||||||||||||    
T  784 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 112754 - 112656
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  112754 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 112656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 47827 - 47760
Alignment:
Q  133 tttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtga 200  Q
    ||||||||||||||| |  | ||||||||||||| | ||||||||||| |  ||||||||||||||||    
T  47827 tttttaatagcatttatatagaaacgctattaaaattgtgctattaaaagctaaaattgtagtagtga 47760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 14189 - 14288
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||||| |||||||| ||| || |||||||| |||||||  | ||||||||||||||||||||||||||    
T  14189 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 24517 - 24616
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| ||||||||||||||| |||| ||||| |||||||| ||| || |||||||| |||||||  | ||||||||||||||||||||||||||    
T  24517 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 24616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 23422 - 23521
Alignment:
Q  5 aagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 104  Q
    |||| ||||| || |||| ||||||| |||||||||| || ||||| |||||| |||||||| | ||||| || |||||||||||||| |||||||||||    
T  23422 aagataaagtgtgattgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 23521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 9877 - 9809
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    ||||||||||||||||| || | ||||||||||||| | ||||||||||| | ||||||||| ||||||    
T  9877 catttttaatagcatttatccagaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtg 9809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 32844 - 32774
Alignment:
Q  131 catttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtgag 201  Q
    ||||||||||||||||| |  ||||||||||||||| |  |||||||||| | ||||||||| ||||||||    
T  32844 catttttaatagcatttattcaaaaacgctattaaaattatgctattaaaagccaaaattgtggtagtgag 32774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 366058 - 366124
Alignment:
Q  133 tttttaatagcatttttcaaaaaacgctattaaagtggtgctattaaaggtcaaaattgtagtagtg 199  Q
    |||||||||||||||| | |||| |||||||| |  ||||||||||||  |||||||||||||||||    
T  366058 tttttaatagcattttactaaaagcgctattatataggtgctattaaaactcaaaattgtagtagtg 366124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University