View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12796_low_3 (Length: 336)

Name: NF12796_low_3
Description: NF12796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12796_low_3
NF12796_low_3
[»] chr1 (1 HSPs)
chr1 (17-314)||(29742831-29743128)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 29742831 - 29743128
Alignment:
Q  17 agtacatatatgagttatcatcattgacgaccggcaaagttgaagaaaagtcatgcatgatacatatattttgatatgaagcttgaaaagacatgaaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29742831 agtacatatatgagttatcatcattgacgaccggcaaagttgaagaaaagtcatgcatgatacatatattttgatatgaagcttgaaaagacatgaaaag 29742930  T
Q  117 aaacctagtcaatttcaacttattagacatttgtggtgcaaaagtaagataagggtaaattcctaatgataagtgcctttccaacagaaataacttcggc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29742931 aaacctagtcaatttcaacttattagacatttgtggtgcaaaagtaagataagggtaaattcctaatgataagtgcctttccaacagaaataactttggc 29743030  T
Q  217 agtagctttcgttttataataacatgtagatccatgactctgccaaactaaacacaaccgtagctttttcaacaacatatcatgtatttgaggccatg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29743031 agtagctttcgttttataataacatgtagatccatgactctgccaaactaaacacaaccgtagctttttcaacaacatatcatgtatttgaggccatg 29743128  T

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