View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12796_low_7 (Length: 250)
Name: NF12796_low_7
Description: NF12796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12796_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 17610889 - 17611132
Alignment:
| Q |
1 |
cattatgagttcaggatcatacaattccttattattcgtcattaagaattctctgggggtttttgaatttattcctttttgaaatgaaatatcttccttg |
100 |
Q |
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| T |
17610889 |
cattatgagttcaggatcatacaattccttattattcgtcattaagaattctctgggggttattgaatttattccttttttaaatgaaatatcttccttg |
17610988 |
T |
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| Q |
101 |
tttccaacatgtattctgacttgctgcaggtggtctcttggcgctataatgtatgaaatgcttgtcggttatcctccattttactctgatgatcctataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17610989 |
tttccaacatgtattctgacttgctgcaggtggtctcttggcgctataatgtatgaaatgcttgtcggttatcctccattttactctgatgatcctgtaa |
17611088 |
T |
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| Q |
201 |
caacatgccgaaaggttttaaactttttcccttattcttctctc |
244 |
Q |
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| T |
17611089 |
caacatgccgaaaggttttaaactttttcccttattcttctctc |
17611132 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 48260398 - 48260487
Alignment:
| Q |
127 |
caggtggtctcttggcgctataatgtatgaaatgcttgtcggttatcctccattttactctgatgatcctataacaacatgccgaaaggt |
216 |
Q |
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| T |
48260398 |
caggtggtcactgggagcgataatgtacgaaatgctggtcggttaccctccattttactctgatgacccaataaccacatgcagaaaggt |
48260487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 15870050 - 15869996
Alignment:
| Q |
127 |
caggtggtctcttggcgctataatgtatgaaatgcttgtcggttatcctccattt |
181 |
Q |
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| T |
15870050 |
caggtggtctcttggagccataatgtatgaaatgcttgtagggtatccaccattt |
15869996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 15922620 - 15922564
Alignment:
| Q |
127 |
caggtggtctcttggcgctataatgtatgaaatgcttgtcggttatcctccatttta |
183 |
Q |
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| T |
15922620 |
caggtggtctctaggagccataatgtatgaaatgcttgtggggtatccgccatttta |
15922564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 5815881 - 5815947
Alignment:
| Q |
129 |
ggtggtctcttggcgctataatgtatgaaatgcttgtcggttatcctccattttactctgatgatcc |
195 |
Q |
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| T |
5815881 |
ggtggtctcttggggcaatcttgtatgagatgcttgttggatatcctccattttgttctgatgatcc |
5815947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 30393030 - 30392950
Alignment:
| Q |
127 |
caggtggtctcttggcgctataatgtatgaaatgcttgtcggttatcctccattttactctgatgatcctataacaacatg |
207 |
Q |
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| T |
30393030 |
caggtggtcactcggtgctatcatgtatgaaatgttggtgggatatccacctttttattctgatgatccaatgacaacatg |
30392950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 39056545 - 39056613
Alignment:
| Q |
127 |
caggtggtctcttggcgctataatgtatgaaatgcttgtcggttatcctccattttactctgatgatcc |
195 |
Q |
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| T |
39056545 |
caggtggtcacttggagctattatgtatgaaatgttggtgggatatccacctttttattctgatgatcc |
39056613 |
T |
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