View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12796_low_8 (Length: 244)
Name: NF12796_low_8
Description: NF12796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12796_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 5207880 - 5208093
Alignment:
| Q |
18 |
aagacacaagagcatacatcaatcacattgaatccattaattatcacaacggtagtatttatttatgataatcttcttatggctgagaaaataagtgaca |
117 |
Q |
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| T |
5207880 |
aagacacaagagcatacatcaatcacattgaatccattaattatcacaacggtagtatt----tatgataatcttcttatggctgagaaaataagtgaca |
5207975 |
T |
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| Q |
118 |
gaaaaaagtaaaccgtgaccgtgagtatttgacttgttaaggggcaaccataactgtatttaatgcaagctattactctcatctgactcaaatattcaat |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5207976 |
gaaaaaagtacaccgtgaccgtgagtatttgacttgttaaggggcaaccataactgtatttaatgcaagctattactctcatctgactcaaatattcaat |
5208075 |
T |
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| Q |
218 |
gtgaacaacaacctttgc |
235 |
Q |
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|||||||||||||||||| |
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| T |
5208076 |
gtgaacaacaacctttgc |
5208093 |
T |
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