View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12796_low_9 (Length: 241)
Name: NF12796_low_9
Description: NF12796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12796_low_9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 17610527 - 17610747
Alignment:
| Q |
21 |
catttcatcacttcaaacatgttttcatttgcttgcatgaaaatccttctccagcttgtctattcatttcatggcaggcattttccactgtcggaactcc |
120 |
Q |
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| T |
17610527 |
cattttatcacttcaaacatgcttacatttgctcgcatgaaagtccttctccaacttgtctattcatttcatggcaggcattttccactgtcggaactcc |
17610626 |
T |
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| Q |
121 |
agattatattgctccggaagtgttactgaaaaagggttatggcgtggagtgtgactggtttgttgatattctttttcatttgctagagttgcatctattt |
220 |
Q |
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| T |
17610627 |
agattatattgctccggaagtgttactgaaaaagggttatggcgtggagtgtgactggtttgttgatattctttttcatttgctagagttgcatctattt |
17610726 |
T |
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| Q |
221 |
atttactgtttttgtagtttt |
241 |
Q |
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| T |
17610727 |
atttactgtttttgtagtttt |
17610747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 17668797 - 17668941
Alignment:
| Q |
97 |
ggcattttccactgtcggaactccagattatattgctccggaagtgttactgaaaaagggttatggcgtggagtgtgactggtttgttgatattcttttt |
196 |
Q |
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| T |
17668797 |
ggcattttctactgttggaactccagactatattgctccagaagtgttactgaaaaagggttatggcttggagtgcgactggtttgttgatattcttttt |
17668896 |
T |
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| Q |
197 |
catttgctagagttgcatctatttatttactgtttttgtagtttt |
241 |
Q |
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| T |
17668897 |
catttgcttgagctgcatctctttattttatgttttggtagtttt |
17668941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 17624405 - 17624543
Alignment:
| Q |
99 |
cattttccactgtcggaactccagattatattgctccggaagtgttactgaaaaagggttatggcgtggagtgtgactggtttgttgatattctttttca |
198 |
Q |
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| T |
17624405 |
cattttccactgttggaactccagactatattgctccagaagtgttactgaaaaagggttatggcttggagtgcgactggtttgttgatattctttttca |
17624504 |
T |
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| Q |
199 |
tttgctagagttgcatctatttatttactgtttttgtag |
237 |
Q |
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| T |
17624505 |
tttgcttgagctgcatctccttattttatgttttggtag |
17624543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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