View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_high_10 (Length: 362)
Name: NF12797_high_10
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 25840375 - 25840558
Alignment:
| Q |
29 |
tgatataattcaatacaatcatatctgtctgtgtcagacacgagcatctgacattgagacacgttacaatgaaga-gagaaaacacatacaggaacccat |
127 |
Q |
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| T |
25840375 |
tgatataattcaatacaatcatatgtgtctgtgtcagacacgag--------------acacgctataatgaagaagagaaaacacatacaggaacccat |
25840460 |
T |
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| Q |
128 |
gattcatctttctcaacatgaccatggttttgatgatgagttctatgactgattctcctgtaaaaataattcacatgattggattgtcaaatcagatt |
225 |
Q |
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| T |
25840461 |
gattcatctttctcaacatgaccatggttttgatgatgagttctatgactgattctcctgtaaaaataattcacatgattggattgtcaaatcagatt |
25840558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 25840647 - 25840691
Alignment:
| Q |
302 |
ctaaccatccatgatatggtacaagaattgatgaatgcaagaaat |
346 |
Q |
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| T |
25840647 |
ctaaccatccatgatatggtacaagaattgatgaatgcaagaaat |
25840691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 4705460 - 4705401
Alignment:
| Q |
128 |
gattcatctttctcaacatgaccatggttttgatgatgagttctatgactgattctcctg |
187 |
Q |
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| T |
4705460 |
gattcatcattttcaacatggccatggttttgatgatgtgttctatgactgattctcctg |
4705401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 589686 - 589583
Alignment:
| Q |
118 |
aggaacccatgattcatctttctcaacatgaccatggttttgatgatgagttctatgactgattctcctgtaaaaataattcacatgattggattgtcaa |
217 |
Q |
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| T |
589686 |
aggaactcatcattcatctttctcaacatgcccatggttttcatggctagttatatgaccgattctcatgcaa----gtttcacatggttggattgtcaa |
589591 |
T |
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| Q |
218 |
atcagatt |
225 |
Q |
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| T |
589590 |
atcagatt |
589583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 30186523 - 30186604
Alignment:
| Q |
111 |
cacatacaggaacccatgattcatctttctcaacatgaccatggttttgatgatgagttctatgactgattctcctgtaaaa |
192 |
Q |
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| T |
30186523 |
cacatactggaacccatgactcatccctttcaacatttccatggttttgatgatgtgttttgtgactaattctcctgaaaaa |
30186604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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