View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12797_high_11 (Length: 359)

Name: NF12797_high_11
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12797_high_11
NF12797_high_11
[»] chr5 (13 HSPs)
chr5 (15-342)||(1599226-1599548)
chr5 (50-342)||(8536359-8536646)
chr5 (113-342)||(8529795-8530018)
chr5 (112-342)||(9073750-9073980)
chr5 (50-332)||(8637753-8638030)
chr5 (50-332)||(8547098-8547375)
chr5 (112-332)||(8645098-8645318)
chr5 (50-332)||(2873497-2873774)
chr5 (112-332)||(2844108-2844328)
chr5 (112-332)||(2855941-2856161)
chr5 (52-228)||(9004343-9004514)
chr5 (50-217)||(8678721-8678883)
chr5 (112-213)||(2904060-2904161)
[»] chr7 (2 HSPs)
chr7 (50-342)||(48360814-48361100)
chr7 (50-332)||(35780709-35780986)
[»] chr4 (1 HSPs)
chr4 (50-342)||(9443956-9444237)
[»] chr6 (1 HSPs)
chr6 (50-332)||(16717196-16717473)
[»] scaffold0627 (1 HSPs)
scaffold0627 (112-332)||(5483-5703)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 1599226 - 1599548
Alignment:
Q  15 cagagagtgatgatgatgaagttttcccnnnnnnngataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgctt 114  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||    
T  1599226 cagagagtgatgatgatgaagttttccctttttttgataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgc-----tt 1599320  T
Q  115 ctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1599321 ctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattc 1599420  T
Q  215 ggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  1599421 ggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtgtgaagcttgcgcc 1599520  T
Q  315 tatgttcaagcttcctctcagatcattt 342  Q
    ||||||||||||||||||||||||||||    
T  1599521 tatgttcaagcttcctctcagatcattt 1599548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 50 - 342
Target Start/End: Complemental strand, 8536646 - 8536359
Alignment:
Q  50 gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac 149  Q
    ||||||||| | |||||||| | ||| | ||||||||||||||||||  ||||||||     ||||||||||||||||||||||||||||||||||||||    
T  8536646 gataatcttccgtctcacgttattgctcacattctgcttcaacttccatttaagtcg-----cttctcatttgtaaatctgtgtgcaaaatttggaaaac 8536552  T
Q  150 attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg 249  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||  |||||| ||||||||  ||    
T  8536551 attgatttcagaatcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaagaacaatg 8536452  T
Q  250 taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctctcagatcattt 342  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||||||| | |||| ||||  ||||||||||||||||||||||||||||||    
T  8536451 taccttcttgagtctgatcctcaaaagtttgagattggaagcaacgatcatgtgaaacttgtgcctatgttcaagcttcctctcagatcattt 8536359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 113 - 342
Target Start/End: Complemental strand, 8530018 - 8529795
Alignment:
Q  113 ttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgat 212  Q
    ||||||||||||||| |||||||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  8530018 ttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgcactttgagcgatcaccaattagtctcatgat 8529919  T
Q  213 tcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgca 312  Q
    ||| ||    |||    ||||||| ||||||||| |||||||||||||||| || ||||| ||||||||||||||||||||| ||| | | |||||||||    
T  8529918 tcgaac--gcgac----accgagtgtcaagaaccctgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgca 8529825  T
Q  313 cctatgttcaagcttcctctcagatcattt 342  Q
    ||||| ||||||||||||||||||||||||    
T  8529824 cctatattcaagcttcctctcagatcattt 8529795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 342
Target Start/End: Original strand, 9073750 - 9073980
Alignment:
Q  112 cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga 211  Q
    |||||||||||||||| |||||||||||||||||||| | | ||||||||| ||||||||||||||| ||| ||||||||| ||||||||||| | ||||    
T  9073750 cttctcatttgtaaatgtgtgtgcaaaatttggaaaagacttatttcagaaccacattttgctaaattgcaatttgagcgagcaccacttagttttatga 9073849  T
Q  212 ttcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgc 311  Q
    ||||||||  |||| ||    |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | | | |||||||     
T  9073850 ttcggacccttgacgatattagagtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttga 9073949  T
Q  312 acctatgttcaagcttcctctcagatcattt 342  Q
     ||||| |||||||||||||||| |||||||    
T  9073950 gcctatattcaagcttcctctcatatcattt 9073980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 50 - 332
Target Start/End: Complemental strand, 8638030 - 8637753
Alignment:
Q  50 gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac 149  Q
    ||||||||| |||| ||| ||||  |||  ||||||||||||||| | ||||||     || |||||||||||||||| ||||||||| |||||||||||    
T  8638030 gataatcttccatcccacatcaccacccaaattctgcttcaactttccattaag-----tctcttctcatttgtaaatgtgtgtgcaagatttggaaaac 8637936  T
Q  150 attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg 249  Q
    | ||||||| ||| ||||||||||||||| ||| ||||||||| | || |||||||||||||||||||| |||||   |   | ||| ||||||||| ||    
T  8637935 aatgatttcggaaccacattttgctaaattgcaatttgagcgagcgccccttagtctcatgattcggacaaatgatggtagactagtgtcaagaaccatg 8637836  T
Q  250 taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctct 332  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||| | |||||||||| ||||| || |||||||||||    
T  8637835 taccttcttgagtgtgatcatgaaaagtttgagattggaagcaacaatcatgtgaagcttgcgcctatatttaagcttcctct 8637753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 50 - 332
Target Start/End: Original strand, 8547098 - 8547375
Alignment:
Q  50 gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac 149  Q
    ||||||||| |||||||| ||||||||| |||||||||| ||||||  || ||||| ||||     |||||||||||| ||| ||||| |||||||||||    
T  8547098 gataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttc-----tcatttgtaaatgtgtttgcaagatttggaaaac 8547192  T
Q  150 attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg 249  Q
    | | |||||||||  |||||||||||||| |||||||||| |||||| | || |||| |||||| ||||  ||||| ||   | ||| ||||||||| ||    
T  8547193 aattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgatagactagtgtcaagaaccatg 8547292  T
Q  250 taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctct 332  Q
    |||| |||||||||||| |||||||||||  |||||||||||||| ||| | |||||||||  ||||| ||||||||||||||    
T  8547293 taccatcttgagtgtgagcctgaaaagttcaagattggaagcaacaatcatgtgaagcttgatcctatattcaagcttcctct 8547375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 112 - 332
Target Start/End: Complemental strand, 8645318 - 8645098
Alignment:
Q  112 cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga 211  Q
    |||||||||||| ||| ||||||||| |||||||||||| | ||||||||| ||||||||||||||| | ||||||||||||||| | || |||||||||    
T  8645318 cttctcatttgtgaatgtgtgtgcaagatttggaaaacacttatttcagaaccacattttgctaaattgaactttgagcgatcacaagtttgtctcatga 8645219  T
Q  212 ttcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgc 311  Q
    ||||||   |||||| |   | ||| ||||||||  ||||||||||||||||||| |||||||||||| | ||||||||||||  |||| | ||||||||    
T  8645218 ttcggatagatgactgtagactagtgtcaagaactatgtaccttcttgagtgtgatcctgaaaagtttcaaattggaagcaacagtcgtgtcaagcttgc 8645119  T
Q  312 acctatgttcaagcttcctct 332  Q
    |||||| || |||||||||||    
T  8645118 acctatatttaagcttcctct 8645098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 50 - 332
Target Start/End: Original strand, 2873497 - 2873774
Alignment:
Q  50 gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac 149  Q
    ||||||||| |||||||| | ||| ||| |||||| ||||||||||| ||||||     || |||||||| |||| || ||||||||||| |||||| ||    
T  2873497 gataatcttccatctcacttaactacccacattcttcttcaacttcccattaag-----tctcttctcatgtgtagatgtgtgtgcaaaacttggaatac 2873591  T
Q  150 attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg 249  Q
    | | ||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||| || ||||||| |     ||| ||    |||| ||||||| | |     
T  2873592 acttatttcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatataggagtgtcaagaaaccta 2873691  T
Q  250 taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctct 332  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| ||| | |||||||||  ||||| ||| ||||||||||    
T  2873692 taccttcttgagtgcgaagctgaaaagtttgagattggaagcaacaatcatgtgaagcttgaccctatattcgagcttcctct 2873774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 112 - 332
Target Start/End: Original strand, 2844108 - 2844328
Alignment:
Q  112 cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga 211  Q
    |||||||| |||| || |||||||||||||||||| ||| | || |||||| ||||||||||||||| ||| ||||||||| ||||| ||||| || |||    
T  2844108 cttctcatatgtagatgtgtgtgcaaaatttggaatacacttatatcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtga 2844207  T
Q  212 ttcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgc 311  Q
    |||| |     ||| ||    |||| ||||||| | | |||||||||||||||||| |||||||||||||||||||||||||  ||| | |||||||||     
T  2844208 ttcgaaatttagacaatataggagtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttga 2844307  T
Q  312 acctatgttcaagcttcctct 332  Q
     ||||| ||| ||||||||||    
T  2844308 ccctatattcgagcttcctct 2844328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 112 - 332
Target Start/End: Original strand, 2855941 - 2856161
Alignment:
Q  112 cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga 211  Q
    |||||||| |||| || |||||||||||||||||| ||| | || |||||| ||||||||||||||| ||| ||||||||| ||||| ||||| || |||    
T  2855941 cttctcatatgtagatgtgtgtgcaaaatttggaatacacttatatcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtga 2856040  T
Q  212 ttcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgc 311  Q
    |||| |     ||| ||    |||| ||||||| | | |||||||||||||||||| |||||||||||||||||||||||||  ||| | |||||||||     
T  2856041 ttcgaaatttagacaatataggagtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttga 2856140  T
Q  312 acctatgttcaagcttcctct 332  Q
     ||||| ||| ||||||||||    
T  2856141 ccctatattcgagcttcctct 2856161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 9004514 - 9004343
Alignment:
Q  52 taatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaacat 151  Q
    ||||||| |||||||| |||||  || |||||||||||| ||||| |||||||| ||||     | ||||||| || ||||||||| ||||||||||||     
T  9004514 taatcttccatctcacctcactaaccacattctgcttcatcttcccattaagtctcttc-----ttatttgtagatgtgtgtgcaagatttggaaaacaa 9004420  T
Q  152 tgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactat 228  Q
    | |||||| || ||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||  ||||||||    
T  9004419 ttatttcataaccacattttgctaaattgcaatttgagcgagcaccaattagtctcatgattcggacttatgactat 9004343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 8678883 - 8678721
Alignment:
Q  50 gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac 149  Q
    ||||||||| |||| ||| ||| ||||| |||| ||||||| ||||| ||||| || ||||     |||||||||||| ||||||||| |||||||||||    
T  8678883 gataatcttccatcacacatcattgcccacattttgcttcatcttcccattaaatctcttc-----tcatttgtaaatgtgtgtgcaagatttggaaaac 8678789  T
Q  150 attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcgga 217  Q
    | | ||||||||| ||||||||||||||| | ||||||||||||||| | || |||||||||||||||    
T  8678788 acttatttcagaaccacattttgctaaattgaactttgagcgatcacaagtttgtctcatgattcgga 8678721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 2904060 - 2904161
Alignment:
Q  112 cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga 211  Q
    |||||||| |||| || |||||||||||||||||| ||| | ||||||||| |  | || ||||||| ||| ||||||||| ||||| | ||| ||||||    
T  2904060 cttctcatatgtagatgtgtgtgcaaaatttggaatacacttatttcagaacctaaattcgctaaattgcaatttgagcgagcaccaatcagtttcatga 2904159  T
Q  212 tt 213  Q
    ||    
T  2904160 tt 2904161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 50 - 342
Target Start/End: Original strand, 48360814 - 48361100
Alignment:
Q  50 gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac 149  Q
    ||||||||| ||| |||| ||||||||| |||||| ||||||||||| |||||||| ||||     | ||||||||||||||||||||||||||||||||    
T  48360814 gataatcttccatatcacctcactgcccacattctccttcaacttcccattaagtctcttc-----ttatttgtaaatctgtgtgcaaaatttggaaaac 48360908  T
Q  150 attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg 249  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    |||| ||||||||| ||    
T  48360909 actgatttcagaatcacaatttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggacc-ctgactatagaggagtgtcaagaaccatg 48361007  T
Q  250 taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctctcagatcattt 342  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| | | | |||||||| ||||||| ||||||||||||||||||||||||    
T  48361008 taccttcttgagtgtgatcctgaaaagtttgagattggaagcaacaaccatgtgaagcttacacctatattcaagcttcctctcagatcattt 48361100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 50 - 332
Target Start/End: Complemental strand, 35780986 - 35780709
Alignment:
Q  50 gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac 149  Q
    ||||||||| |||| ||| |||| |||| |||| ||||||||||||| || || || ||||     ||||||||| || |||||||| ||| || |||||    
T  35780986 gataatcttccatcccacctcaccgcccacattttgcttcaacttcccataaaatctcttc-----tcatttgtagatgtgtgtgcataatctgaaaaac 35780892  T
Q  150 attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg 249  Q
    | ||||||||||| | || |||||||||| ||||||||||| |||||||  |||||||||| ||||||||  |  ||   | |  || ||||||||| ||    
T  35780891 aatgatttcagaaccgcaatttgctaaattgcactttgagctatcaccaactagtctcatggttcggacccgtcgcttagatcatgtgtcaagaaccctg 35780792  T
Q  250 taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctct 332  Q
     |||||||||||||||| ||||||||||||||| ||||||| ||| ||| | |||||||||  || || || |||||||||||    
T  35780791 caccttcttgagtgtgagcctgaaaagtttgagtttggaaggaacaatcttgtgaagcttgaccccatatttaagcttcctct 35780709  T

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Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 50 - 342
Target Start/End: Complemental strand, 9444237 - 9443956
Alignment:
Q  50 gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac 149  Q
    ||||||||| | |||||| ||||||||| |||||| |||| ||||||  |||||||  |||     ||||||||||||||||||||||| ||||||||||    
T  9444237 gataatcttccgtctcacctcactgcccacattctccttcgacttccatttaagtctgttc-----tcatttgtaaatctgtgtgcaaagtttggaaaac 9444143  T
Q  150 attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg 249  Q
    | |||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||  | |||    ||||||| ||||||||| |     
T  9444142 aatgatttcagaatcacaatttgctaaattgcactttgagcgatcaccaattagtctcatgattcgaac--acgac----accgagtgtcaagaacccta 9444049  T
Q  250 taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctctcagatcattt 342  Q
    |||||||||||||| || ||||| ||||||||||||||||||||| ||| | | |||||||||||||| ||||||||||||||||||||||||    
T  9444048 taccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcattt 9443956  T

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Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 50 - 332
Target Start/End: Complemental strand, 16717473 - 16717196
Alignment:
Q  50 gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac 149  Q
    |||| |||| |||| ||| |||| |||| |||| ||||||||||||| || |||     || |||||||||||||||| ||||||||||||||||||||     
T  16717473 gatattcttccatcccacctcaccgcccacattttgcttcaacttcccatcaag-----tctcttctcatttgtaaatgtgtgtgcaaaatttggaaaag 16717379  T
Q  150 attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg 249  Q
    | ||||||||||||| |||||||||||||  |||||||||| ||||||| |||||||||||||||| || |   ||||| | ||||| ||||||||| |     
T  16717378 aatgatttcagaatcgcattttgctaaattacactttgagcaatcaccaattagtctcatgattcgaacaagatactataaacgagtgtcaagaaccctc 16717279  T
Q  250 taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctct 332  Q
    |||||||| ||||| || || |||||||||||||||||||||||| ||| | |||| ||||  ||||| ||||  ||||||||    
T  16717278 taccttctagagtgcgatccagaaaagtttgagattggaagcaacaatcatgtgaatcttgagcctatattcagacttcctct 16717196  T

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Target: scaffold0627 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 112 - 332
Target Start/End: Complemental strand, 5703 - 5483
Alignment:
Q  112 cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga 211  Q
    |||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||  |||||||||||||||||  ||||||||||||    
T  5703 cttctcatttgtaaatgtgtgtgcaaaatttggaaagcaatgatttcagaaccacattttgctaaattacactttgagcgatcaccgattagtctcatga 5604  T
Q  212 ttcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgc 311  Q
    |||| || |   |||||   ||||| ||||||||| | ||||||||||| || || ||| ||||||||||||||||||||||| ||| | |||||||||     
T  5603 ttcgaacaagatactatagacgagtgtcaagaaccctataccttcttgaatgcgatcctaaaaagtttgagattggaagcaacaatcatgtgaagcttga 5504  T
Q  312 acctatgttcaagcttcctct 332  Q
     ||||| |||| |||| ||||    
T  5503 gcctatattcaggcttactct 5483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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