View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_high_14 (Length: 341)
Name: NF12797_high_14
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_high_14 |
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| [»] scaffold0896 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 4149566 - 4149876
Alignment:
| Q |
15 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
4149566 |
gatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatggaagaatctctgga |
4149665 |
T |
|
| Q |
115 |
agtatattcctgttctttcaataagttgttgccacttcgagactcggaagggtttcatcagattcgtgtctcaatttttgtatctacgtgataacaaaac |
214 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||| |
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| T |
4149666 |
agtatattcctgttctttcaataagttcttgccacttcgagactcggatgggtttcaccatattcgtgtatcaatttttgtatctacgtgataacaaaac |
4149765 |
T |
|
| Q |
215 |
cgcactgcacactctccatcttcaccgcgaaggtgtcatctggcctcgccacctcaagtgggttataaaatatgcatttgaccacggtgtccagctatta |
314 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4149766 |
cgcactgcacactctcgatcttcaccgcgatggtgtcatctggcctggctacctcaactgggttataaaatacgcatttgaccacggtgtccagctatta |
4149865 |
T |
|
| Q |
315 |
gatgtagattc |
325 |
Q |
| |
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||||||||||| |
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| T |
4149866 |
gatgtagattc |
4149876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 4165338 - 4165648
Alignment:
| Q |
15 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
4165338 |
gatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatggaagaatctctgga |
4165437 |
T |
|
| Q |
115 |
agtatattcctgttctttcaataagttgttgccacttcgagactcggaagggtttcatcagattcgtgtctcaatttttgtatctacgtgataacaaaac |
214 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||| |
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| T |
4165438 |
agtatattcctgttctttcaataagttcttgccacttcgagactcggatgggtttcaccatattcgtgtatcaatttttgtatctacgtgataacaaaac |
4165537 |
T |
|
| Q |
215 |
cgcactgcacactctccatcttcaccgcgaaggtgtcatctggcctcgccacctcaagtgggttataaaatatgcatttgaccacggtgtccagctatta |
314 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4165538 |
cgcactgcacactctcgatcttcaccgcgatggtgtcatctggcctggctacctcatgtgggttataaaatacgcatttgaccacggtgtccagctatta |
4165637 |
T |
|
| Q |
315 |
gatgtagattc |
325 |
Q |
| |
|
||||||||||| |
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| T |
4165638 |
gatgtagattc |
4165648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 7115645 - 7115543
Alignment:
| Q |
15 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
114 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
7115645 |
gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga |
7115546 |
T |
|
| Q |
115 |
agt |
117 |
Q |
| |
|
||| |
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|
| T |
7115545 |
agt |
7115543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 7120717 - 7120615
Alignment:
| Q |
15 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
114 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
7120717 |
gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga |
7120618 |
T |
|
| Q |
115 |
agt |
117 |
Q |
| |
|
||| |
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|
| T |
7120617 |
agt |
7120615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 7124121 - 7124019
Alignment:
| Q |
15 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
114 |
Q |
| |
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|||||||| ||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
7124121 |
gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga |
7124022 |
T |
|
| Q |
115 |
agt |
117 |
Q |
| |
|
||| |
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|
| T |
7124021 |
agt |
7124019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 8656740 - 8656649
Alignment:
| Q |
25 |
attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag |
116 |
Q |
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||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| || || ||||||||||||||||||||| |
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| T |
8656740 |
attgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag |
8656649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 32413613 - 32413704
Alignment:
| Q |
25 |
attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag |
116 |
Q |
| |
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||||||| ||||||| |||||| || ||||||||||||| | ||||||||||| || || ||||| | ||||||||||||||||||||| |
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| T |
32413613 |
attgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaag |
32413704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 19658395 - 19658349
Alignment:
| Q |
69 |
gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa |
115 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||| |||||||||||| |
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|
| T |
19658395 |
gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa |
19658349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 19675234 - 19675188
Alignment:
| Q |
69 |
gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa |
115 |
Q |
| |
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||||||||||| |||||| ||||| ||||||||| |||||||||||| |
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| T |
19675234 |
gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa |
19675188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 2256 - 2321
Alignment:
| Q |
52 |
ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagt |
117 |
Q |
| |
|
|||||||||||||| | || |||||||| |||||| || || |||||||||||||||||||||| |
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| T |
2256 |
ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagt |
2321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 1473 - 1537
Alignment:
| Q |
52 |
ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag |
116 |
Q |
| |
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|||||||||||||| | || |||||||| |||||| || || ||||||||||||||||||||| |
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|
| T |
1473 |
ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag |
1537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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