View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_high_18 (Length: 269)
Name: NF12797_high_18
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 47281471 - 47281715
Alignment:
| Q |
13 |
caaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaactgatcactggaatcatccattattctctcttctctacta |
112 |
Q |
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| T |
47281471 |
caaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaaccgatcactgaaatcatccattattctctcttctctacta |
47281570 |
T |
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| Q |
113 |
tgcacaaaccactcactcacaacgtaaactatgcaactgagcaaataaataaagattgtttttcgtggactatctacgcataaagaataatgggaaactt |
212 |
Q |
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| T |
47281571 |
tgcacaaaccacttactcacaacgtaaactatgcaactgagcaaataaataaagattgtttttcgtggactatctacgcataaagaataatgggaaactt |
47281670 |
T |
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| Q |
213 |
tcttggtaaacacttttatttcttttatctttgttgtggggttca |
257 |
Q |
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| T |
47281671 |
tctttgtaaacacttttatttcttttatctttgttgtggggttca |
47281715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 38099524 - 38099613
Alignment:
| Q |
34 |
atcatcgtcaacggcaagaacacgcattccgatgggaaactgatcactggaatcatccattattctctcttctctactatgcacaaacca |
123 |
Q |
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| T |
38099524 |
atcaccgtctacgacaagaacatgcattccgatgggaaaccgatcactggaatcatccattattctctcttctctactacgcacaaacca |
38099613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 49062380 - 49062470
Alignment:
| Q |
13 |
caaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaactgatcactggaatcatccattattctctct |
103 |
Q |
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| T |
49062380 |
caaaaccaagagacaagttggatcgtcgtcaacggcgagaacacgcattccgataggaaaacggtcaccggaatcaaccatttttctctct |
49062470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 47276116 - 47276189
Alignment:
| Q |
39 |
cgtcaacggcaagaacacgcattccgatgggaaactgatcactggaatcatccattattctctcttctctacta |
112 |
Q |
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| T |
47276116 |
cgtcgacggcgagaacacgcattccgattggaaaccggtcactggagtcgtccataattctctcttctctacta |
47276189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 48871585 - 48871630
Alignment:
| Q |
34 |
atcatcgtcaacggcaagaacacgcattccgatgggaaactgatca |
79 |
Q |
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| T |
48871585 |
atcatcatcaacagcaagaacacgcattccgataggaaacttatca |
48871630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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