View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12797_high_19 (Length: 254)
Name: NF12797_high_19
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 40514448 - 40514235
Alignment:
| Q |
18 |
attttaaggggagtatgacataacatttataagaaaatgaatcaatgaatgaatatacttctgcattacctatcttttgcttttcaatagcctccatagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40514448 |
attttaaggggagtatgacataacatttataagaaaatgaatcaatgaatgaatatacttctgcattacctatcttttgcttttcaatagcctccatagg |
40514349 |
T |
|
| Q |
118 |
tgtggaggataagttgcttgcagcagagggaaatgctttggaatatttctcactttaattggtgctccttccattttttgttggtgtatatatgtaagaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40514348 |
tgtggaggataagttgcttgcagcagagggaaatgctttggaatatttctcactttaattggtgctccttccattttttgttggtgtatatatgtaagaa |
40514249 |
T |
|
| Q |
218 |
acttattttgttgt |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40514248 |
acttattttgttgt |
40514235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University