View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_high_22 (Length: 247)
Name: NF12797_high_22
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_high_22 |
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| [»] scaffold0166 (4 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 22201 - 22282
Alignment:
| Q |
149 |
tgaataggttctagaatgtttgtttacatgtaatccattggcaagtaaacgatattgtacttggaccaatcctcgggatctg |
230 |
Q |
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| T |
22201 |
tgaataggttctagaatgttcgtttacatgtaatccattggcaagtaaacgatattgtacttggaccaatcctcgggatctg |
22282 |
T |
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Target: scaffold0166; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 22086 - 22154
Alignment:
| Q |
22 |
cagcaggtgtagtaaagttcacaaatgcataacctaaattagacattcttctttcaacagcatgcttcc |
90 |
Q |
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| T |
22086 |
cagcaggtgttgtaaagttcacaaatgcataacctaaattagacattcttctttcaagagcatgcttcc |
22154 |
T |
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Target: scaffold0166; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 32825 - 32761
Alignment:
| Q |
26 |
aggtgtagtaaagttcacaaatgcataacctaaattagacattcttctttcaacagcatgcttcc |
90 |
Q |
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| T |
32825 |
aggtgttgtaaagttcacaaatgcataccctaaattagacatttttcctttaacagcatgcttcc |
32761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 32677 - 32606
Alignment:
| Q |
149 |
tgaataggttctagaatgtttgtttacatgtaatccattggcaagtaaacgatattgtacttggaccaatcc |
220 |
Q |
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| T |
32677 |
tgaaaaggttctagaatattcatttacatgtaatccatcggcaaataaacgaaatcaaacttggaccaatcc |
32606 |
T |
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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 24779818 - 24779899
Alignment:
| Q |
149 |
tgaataggttctagaatgtttgtttacatgtaatccattggcaagtaaacgatattgtacttggaccaatcctcgggatctg |
230 |
Q |
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| T |
24779818 |
tgaataggttctagaatgttcgtttacatgtaatccattggcaagtaaacgatattgtacttggaccaatcctcgggatctg |
24779899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 24779703 - 24779771
Alignment:
| Q |
22 |
cagcaggtgtagtaaagttcacaaatgcataacctaaattagacattcttctttcaacagcatgcttcc |
90 |
Q |
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| T |
24779703 |
cagcaggtgttgtaaagttcacaaatgcataacctaaattagacattcttctttcaagagcatgcttcc |
24779771 |
T |
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Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 24790442 - 24790378
Alignment:
| Q |
26 |
aggtgtagtaaagttcacaaatgcataacctaaattagacattcttctttcaacagcatgcttcc |
90 |
Q |
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| T |
24790442 |
aggtgttgtaaagttcacaaatgcataccctaaattagacatttttcctttaacagcatgcttcc |
24790378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 24790294 - 24790223
Alignment:
| Q |
149 |
tgaataggttctagaatgtttgtttacatgtaatccattggcaagtaaacgatattgtacttggaccaatcc |
220 |
Q |
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| T |
24790294 |
tgaaaaggttctagaatattcatttacatgtaatccatcggcaaataaacgaaatcaaacttggaccaatcc |
24790223 |
T |
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