View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12797_high_23 (Length: 240)

Name: NF12797_high_23
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12797_high_23
NF12797_high_23
[»] chr8 (3 HSPs)
chr8 (17-240)||(31477107-31477330)
chr8 (17-228)||(31502471-31502682)
chr8 (17-229)||(31467261-31467473)
[»] chr5 (12 HSPs)
chr5 (110-199)||(9301152-9301241)
chr5 (110-199)||(9331568-9331657)
chr5 (110-199)||(9351296-9351385)
chr5 (110-180)||(9374138-9374208)
chr5 (110-199)||(9287807-9287896)
chr5 (110-199)||(9292330-9292419)
chr5 (110-199)||(9304770-9304859)
chr5 (110-181)||(9296955-9297026)
chr5 (110-180)||(9349637-9349707)
chr5 (110-152)||(9357016-9357058)
chr5 (110-199)||(9329393-9329482)
chr5 (114-180)||(9368248-9368314)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 31477107 - 31477330
Alignment:
Q  17 ataactcatataatgtcaatgagtttttgtgtgttgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacttgcaggcttcacatga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31477107 ataactcatataatgtcaatgagtttttgtgtgttgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacttgcaggcttcacatga 31477206  T
Q  117 aagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagagcttccctcttgaatata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31477207 aagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagagcttccctcttgaatata 31477306  T
Q  217 atttctcaatagaccatttttcat 240  Q
    ||||||||||||||||||||||||    
T  31477307 atttctcaatagaccatttttcat 31477330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 31502471 - 31502682
Alignment:
Q  17 ataactcatataatgtcaatgagtttttgtgtgttgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacttgcaggcttcacatga 116  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  31502471 ataactcggataatgtcaatgagtttttgtgtgttgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacatgcaggctgcacatga 31502570  T
Q  117 aagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagagcttccctcttgaatata 216  Q
    |||||| |||||||||||||| | |||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  31502571 aagattggaggctttggagaaagtaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctagaacttccctcttgaatata 31502670  T
Q  217 atttctcaatag 228  Q
    ||||||||||||    
T  31502671 atttctcaatag 31502682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 31467261 - 31467473
Alignment:
Q  17 ataactcatataatgtcaatgagtttttgtgtgttgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacttgcaggcttcacatga 116  Q
    |||||||| | ||| ||||||||||    ||||| |||||||| ||||  || ||||||||||||   |||| ||| ||||| || |||||| |||||||    
T  31467261 ataactcagaaaatatcaatgagttgcaatgtgtggaagctactttaaatacccttttaagtgaatccactattggcgaaaagtttcaggctgcacatga 31467360  T
Q  117 aagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagagcttccctcttgaatata 216  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||| || |||  |||| | ||||||||||| |||    
T  31467361 aagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttagacacttaattaaaattagatcctccctcttgaacata 31467460  T
Q  217 atttctcaataga 229  Q
    || ||||||||||    
T  31467461 atctctcaataga 31467473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 9301241 - 9301152
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagag 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || |||| ||| |||||  |||||||||| ||| | ||| ||||||    
T  9301241 cacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggcgtttggttaaaactagag 9301152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 9331657 - 9331568
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagag 199  Q
    |||||||| |||| ||||||||||||||||||||||||||||| ||||||| ||| |||||  |||||||||| ||| | ||| ||||||    
T  9331657 cacatgaaggatttgaggctttggagaatgcaattgaaagtatagagaatggtttagagaatatatttaggcgtttggttaaaactagag 9331568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 9351385 - 9351296
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagag 199  Q
    |||||||| |||| ||||||||||||||||||||||||||||| ||||||| ||| |||||  |||||||||| ||| | ||| ||||||    
T  9351385 cacatgaaggatttgaggctttggagaatgcaattgaaagtatagagaatggtttagagaatatatttaggcgtttggttaaaactagag 9351296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 9374138 - 9374208
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttagg 180  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || |||| ||| |||||  ||||||||    
T  9374138 cacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttagg 9374208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 9287896 - 9287807
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagag 199  Q
    ||||||||||||| |||||||||||||||||||||||||  || || |||| |||||||||  |||||||||| ||| | ||| ||||||    
T  9287896 cacatgaaagatttgaggctttggagaatgcaattgaaatgatagaaaatggtttggagaatgtatttaggcgtttggttaaaactagag 9287807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 9292419 - 9292330
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagag 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || || | ||| |||||  |||||||||| ||| | ||| ||||||    
T  9292419 cacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaagggtttagagaatatatttaggcgtttggttaaaactagag 9292330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 9304859 - 9304770
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagag 199  Q
    ||||||||||||| |||||||| |||||||||||||||||||| || |||| ||| |||||  |||||||||| ||| | ||| ||||||    
T  9304859 cacatgaaagatttgaggctttcgagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggcgtttggttaaaactagag 9304770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 9297026 - 9296955
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggc 181  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| || |||| ||| |||||  |||||||||    
T  9297026 cacatgatagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggc 9296955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 9349637 - 9349707
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttagg 180  Q
    ||||||||||||| || |||||||||||||||||||||||||| || |||| ||| |||||  ||||||||    
T  9349637 cacatgaaagatttgaagctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttagg 9349707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 9357016 - 9357058
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtat 152  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  9357016 cacatgaaagatttgaggctttggagaatgcaattgaaagtat 9357058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 9329393 - 9329482
Alignment:
Q  110 cacatgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagag 199  Q
    ||||||||||||| |||||||||||||||||| |||||||||| || |||| ||| || ||  |||||||||| ||| | ||| ||||||    
T  9329393 cacatgaaagatttgaggctttggagaatgcagttgaaagtatagaaaatggtttagaaaatatatttaggcgtttggttaaaactagag 9329482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 9368248 - 9368314
Alignment:
Q  114 tgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttagg 180  Q
    ||||||||| |||||||||||||||||||||||||  ||||| |||| ||| |||||  ||||||||    
T  9368248 tgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttagg 9368314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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