View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_high_4 (Length: 521)
Name: NF12797_high_4
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Complemental strand, 41555854 - 41555454
Alignment:
| Q |
12 |
gagcagagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaatg |
111 |
Q |
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| T |
41555854 |
gagcagagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaatg |
41555755 |
T |
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| Q |
112 |
agagaggttccatttgattccgcaaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagcca |
211 |
Q |
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| T |
41555754 |
agagaggttccatttgattccgcaaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagcca |
41555655 |
T |
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| Q |
212 |
tgaatgtatctttgatgagttcttgagtggaattgatatatattgaatattgatgtaattaggaagcgattgcaatcacgtagaggattaggaagtgatg |
311 |
Q |
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| T |
41555654 |
tggatgtatctttgatgagttcttgagtggaattgatatatattgaatattgatgtaattaggaagcgattgcaatcacgtagaggattaggaagtgatg |
41555555 |
T |
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| Q |
312 |
agagtattgatgtaaatataaacagagtgtacttgtaattactggtataccgtatattgaaac---aataggtataagcggccaaaggttgatattttaa |
408 |
Q |
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| T |
41555554 |
agagtattgatgtaaatataaacagagtgtacttgtaattactggtataccgtatattgaaacaaaaaaaggtataagcggctaaaggatgatattttaa |
41555455 |
T |
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| Q |
409 |
a |
409 |
Q |
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| T |
41555454 |
a |
41555454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 407 - 505
Target Start/End: Complemental strand, 41555400 - 41555302
Alignment:
| Q |
407 |
aaacactactcattaacaaaagattagtaaatattattattacaagtcaaaatggaatatattaaatcgatatatgcattctaactagtacaagaagtg |
505 |
Q |
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| T |
41555400 |
aaacactactcattaacaaaagattagtaaatgtttttataacaaatcaaaatggaatatattaaatcgatatatgcattctaactagtacaagaagtg |
41555302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 41560502 - 41560408
Alignment:
| Q |
16 |
agagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaat |
110 |
Q |
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| T |
41560502 |
agagagaaatcaatgactgggatggaagctgcaagctcctctgtaacatcaacaatatcatcaggttctgcgagggagtggtaacttgaaggaat |
41560408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 41560404 - 41560313
Alignment:
| Q |
135 |
aaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagccatgaatgtatctttga |
226 |
Q |
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| T |
41560404 |
aaaggctttgatacttgaaatatttgatgcatcaacttttgtaggttctgatgatgaaatgaaaggagctgaagccatggatgtatatttga |
41560313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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