View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_low_1 (Length: 851)
Name: NF12797_low_1
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 17 - 728
Target Start/End: Complemental strand, 39919063 - 39918352
Alignment:
| Q |
17 |
agctttcaccatcttcaacacttctgctccttccccaccaattccatacattagatgaaacccaaacggtttgaaaaaattcggaatcgaaggtaatttt |
116 |
Q |
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| T |
39919063 |
agctttcaccatcttcaacacttctgctccttccccaccaattccatacattagatgaaacccaaacggtttgaaaaaattcggaatcgaaggtaatttt |
39918964 |
T |
|
| Q |
117 |
aaccaaggtaaagccttgtctatcagtcgagttgtttttgctaacacacgtctcaggcgcgatgcgccttttacttcaagggtaaacacgtctttgcagt |
216 |
Q |
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| T |
39918963 |
aaccaaggtaaagccttgtctatcagtcgagttgtttttgctaacacacgtctcacgcgcgatgcgccttttacttcaagggtaaacacgtctttgcagt |
39918864 |
T |
|
| Q |
217 |
tccaaacacttactaaagcccacgaactcggtgggtccattaaaaagctttcggagccggaccaattatatgatccggccccatattttccgtctcttgg |
316 |
Q |
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| T |
39918863 |
tccaaacacttactaaagcccacgaactcggtgggtccattaaaaagctttcggagccggaccagttatctgatccggccccatattttccgtctcttgg |
39918764 |
T |
|
| Q |
317 |
aacggctaagaaggttccgagggtgagtttgtttttcaaaacagaatcaatgtcacgaggaaaaaactcagtggtggagaatttgtaacggtaaagtgtt |
416 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39918763 |
aatggctaagaaggttccgagggtgagtttgtttttcaaaacagaatcaatgtcacgaggaaaaaactcagtggtggagaatttgtaacggtaaagtgtt |
39918664 |
T |
|
| Q |
417 |
tcagcgtcgtttggtgtgagtttaaggattgttgttttggacgatgatgttttgagacggtgtttgaaaacggggttaacaaggattgacggtgtacgga |
516 |
Q |
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| T |
39918663 |
tcagcgtcgtttggtgtgagtttaaggattgttgttttggacgatgatgttttgagacggtgtttgaaaacggggttaacaaggattgacggtgtacgga |
39918564 |
T |
|
| Q |
517 |
actttgagtaaccgcatttgtcggtgaaaagtttaactgatgcaacgttgtcgttttcagtagccatgtaagaatactcagcaccattttcacgaaacca |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39918563 |
actttgagtaaccgcatttgtcggtgaaaagtttaactgatgcaacgttatcgttttcagtagccatgtaagaatactcagcaccattttcacgaaacca |
39918464 |
T |
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| Q |
617 |
ttgttccattttctctaccagttttagccctattcccattcttctatgatttggagaaactcttaagcctaaaacgtaggctagttttgtgaaaacaggg |
716 |
Q |
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| T |
39918463 |
ttgttccattttctctaccagttttagccctattcccattcttctatgatttggagaaactcttaagcctaaaacgtaggctagttttgtgaaaacaggg |
39918364 |
T |
|
| Q |
717 |
acatgattggaa |
728 |
Q |
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|||||||||||| |
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| T |
39918363 |
acatgattggaa |
39918352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 777 - 839
Target Start/End: Complemental strand, 39918303 - 39918241
Alignment:
| Q |
777 |
ccgcatgtaacggttttgatacaacctcgtatcattccgactgtctcattgcctatctctgct |
839 |
Q |
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| T |
39918303 |
ccgcatgtaacggttttgatacaacctcgtatcattccgactgtctcattgcctatctctgct |
39918241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 484 - 553
Target Start/End: Original strand, 5545448 - 5545517
Alignment:
| Q |
484 |
aaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcatttgtcggtgaaaagtttaac |
553 |
Q |
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| T |
5545448 |
aaacggggttgacgagaattgacggtgtacggaactttgtataaccgcatttttcagtgaagagtttaac |
5545517 |
T |
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