View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_low_10 (Length: 377)
Name: NF12797_low_10
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 38089877 - 38090222
Alignment:
| Q |
13 |
gagacaaaccgatgattctctccagaaagttatgtacatgaattgttggggtcaaggctaaagaataatacctagacactgatagctttgattagaagtg |
112 |
Q |
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| T |
38089877 |
gagacaaaccgatgattctctccagaaagttatgtacatgaattgttggggtcaaggctaaagaataatacctagacactgatagctttgattagaagtg |
38089976 |
T |
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| Q |
113 |
ttggtcctgcttgttggaaactattggtgacaacgaggaaaaattgattcatagggtgcagaatcaaccctatgtttgagtgaggattggaaaagagcaa |
212 |
Q |
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| T |
38089977 |
ttggtcctgcttgttggaaactattggtgacaacgaggcaaaattgattcatcgg-tgcagaatcaaccctatgtttgagtgaggattggaaaagagcaa |
38090075 |
T |
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| Q |
213 |
caatggaattgtcgtggttaaattgataagtctatgagaacaagatcttcttcattcaactatgcatgcatgagactaaagggaaatttgttgcaattgc |
312 |
Q |
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| T |
38090076 |
caatggaattctcgtgcttaaattgataagtctatcagaacaagatcttcttcattcaactatgcatgcatgagactaaagggaaatttgttccaattgc |
38090175 |
T |
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| Q |
313 |
aaatttttcttttagcaacctgaaaacgagtgtgcaaagcccgaggt |
359 |
Q |
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| T |
38090176 |
aaatttttcttttagcaacctgaaaacgagtgtgcaaagcccgaggt |
38090222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 38092863 - 38092923
Alignment:
| Q |
13 |
gagacaaaccgatgattctctccagaaagttatgtacatgaattgttggggtcaaggctaa |
73 |
Q |
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| T |
38092863 |
gagacaaaccgatgattctcttcagaaagttatgtacatgaactgttggggtcagggctaa |
38092923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 38096137 - 38096196
Alignment:
| Q |
19 |
aaccgatgattctctccagaaagttatgtacatgaattgttggggtcaaggctaaagaat |
78 |
Q |
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| T |
38096137 |
aaccgatgattctcttcggaaagttatgtacatgaattgctggggtcaaggctaaagaat |
38096196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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