View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12797_low_15 (Length: 354)
Name: NF12797_low_15
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 21 - 349
Target Start/End: Original strand, 26441331 - 26441660
Alignment:
| Q |
21 |
tttgaagagctgaatgtgctgaatgatatatataccatgcaacaagagcaacaagcacaaatgcttaactggaatgattataatgcggagcagctctcct |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26441331 |
tttgaagagctgaatgtgctgaatgatatatataccatgcaacaagagcaacaagcacaaatgcttaactggaatgattataatgtggagcagctctcct |
26441430 |
T |
|
| Q |
121 |
atgatccattttcaaattataattcaattccatatgaacaaggtgagaacaagttaccatttttgt-aaaatatattcattttaggaattgtttgttatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26441431 |
atgatccattttcaaattataattcaattccatatgaacaaggtgagaacaagttaccatttttgtaaaaatatattcattttaggaattgtttgttatt |
26441530 |
T |
|
| Q |
220 |
attgcaacaactactaagaaacaattattgtttccattatgagaagttcttgatctaaaattatggttgcataactcgttcatagatacacattaaatat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26441531 |
attgcaacaactactaagaaacaattattgtttccattatgagaagttcttgatctaaacttatggttgcataactcgttcatagatacacattaaatat |
26441630 |
T |
|
| Q |
320 |
agtaaatcaatactagggcttcttctcact |
349 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||| |
|
|
| T |
26441631 |
agtaaagcaatactagggtttcttatcact |
26441660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University