View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_low_2 (Length: 645)
Name: NF12797_low_2
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 16 - 635
Target Start/End: Original strand, 47630096 - 47630717
Alignment:
| Q |
16 |
gtttgttctctcatgactaatcgattgaacttttttatgcttaataatcaataagaatcccaatagaaattattcgacgcttgttcgattactttctacc |
115 |
Q |
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| T |
47630096 |
gtttgttctctcatgactaatcgattgaacttttttatgcttaataatcaataagagtccaaatagaaattattcgacgcttgttcgattactttctacc |
47630195 |
T |
|
| Q |
116 |
aaacaattataaaaattatagaaccaatgctaatagatatccaaaa-gaagtgtgtgaagcttaatgggttggttactttcaccaaattcataacttcac |
214 |
Q |
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| T |
47630196 |
aaacaattataaaaattatagaaccaatgctaatatatatccaaaaagaagtgtgtgaagcttaatgggttggttactttcaccaaattcataacttcac |
47630295 |
T |
|
| Q |
215 |
agtcaaattatgttttctacaaccaaacccactccctattttatttatccattgcactcttctttgtttttcatattactaattaaagatgcttgtgaaa |
314 |
Q |
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| T |
47630296 |
agtcaaattatgttttctacaaccaaacccactccctattttatttatctattgcactgttctttgttttttatattactaattaaagatgcttgtgaaa |
47630395 |
T |
|
| Q |
315 |
atcaaggatcgtcaatctaagtccaaagttagagagtgttaagcttccttactgttcatttatttataattagaattgaaaagtgnnnnnnncctcaaca |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47630396 |
atcaaggatcgtcaatctaagtccaaagttagagagtgttaagcttccttactgttcatttatttataattagaattgaaaagtgtttttttcctcaaca |
47630495 |
T |
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| Q |
415 |
cttaaaaggtcacatgcatgtattacattcaagtcacggttagtatgatttcaaagttcaccc-nnnnnnnaatttaatagttggtacatctttagatac |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47630496 |
cttaaaaggtcacatgcatgtattacattcaagtcacggttagtatgatttcaaagttcacccttttttttaatttaatagttggtacatctttagatac |
47630595 |
T |
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| Q |
514 |
gaaaccagattgnnnnnnntactgaacaaattctcttgctaatccttttgaagaagatattttatcgaacaagtgagaattaacatctttataatttgca |
613 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47630596 |
gacaccagattgaaaaaaatactgaacaaattctcttgctaatccttttgaggaagatattttatcgaacaagtgagaattaacatctttataatttgca |
47630695 |
T |
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| Q |
614 |
gtatccacctcaatagtctctg |
635 |
Q |
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| T |
47630696 |
gtatccacctcaatagtctctg |
47630717 |
T |
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