View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_low_24 (Length: 250)
Name: NF12797_low_24
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31477365 - 31477605
Alignment:
| Q |
1 |
tgttttagtagggatttgcttgaggattgaatatttttagctcaatggtgtataattgtataaaattcaatggcaatacaatgaaatgcaaagaaaattt |
100 |
Q |
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| T |
31477365 |
tgttttagtagggatttgcttgaggattgaatatttttagctcaatggtgtataattgtataaaattcaatggcaatacaatgaaatgcaaagaaaattt |
31477464 |
T |
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| Q |
101 |
gaattcctttttagttaattatatgcttttggttcattcaataaaagcttttattcaaaattgaaaagaaaatagtgggataagccggtgtggtatatgt |
200 |
Q |
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| T |
31477465 |
gtattcctttttagttaattatatgcttttggttcattcaataaaagcttttatttaagattgaaaagaaaatagtgggataagccggtgtggtatatgt |
31477564 |
T |
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| Q |
201 |
tgaattatgcctttgaaatcttcaagtgttgtcttctctgct |
242 |
Q |
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| T |
31477565 |
tgaattgtgcc-ttgaaatcttcaagtgttgtcttctctgct |
31477605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31502732 - 31502773
Alignment:
| Q |
1 |
tgttttagtagggatttgcttgaggattgaatatttttagct |
42 |
Q |
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| T |
31502732 |
tgttttagtcggaatctgcttgaggattgaatatttttagct |
31502773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 31502780 - 31502824
Alignment:
| Q |
62 |
aaaattcaatggcaatacaatgaaatgcaaagaaaatttgaattc |
106 |
Q |
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| T |
31502780 |
aaaattcatttgtaatacaatgaaatgcaaagaaaatttgtattc |
31502824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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