View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_low_3 (Length: 615)
Name: NF12797_low_3
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 12455188 - 12455499
Alignment:
| Q |
1 |
tttccaagcagagagcccgtttacaagatttgaacatgcgacctacgaagcacatacatggacacggacacggatacatattcgacatcggaaaactcct |
100 |
Q |
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| T |
12455188 |
tttccaagcagagagcccgtttacaagatttgaacatgcgacctacgaagcacatacatggacacggacccggatacatattcgacatcggaaaactcct |
12455287 |
T |
|
| Q |
101 |
aatccgaggagtatttgtgcttcatagtctagcacgcttcttacattattgtaaaaagttatagacagggcgtatagccaaaactgtggttgaatgtgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12455288 |
aatccgaggagtatttgtgcttcatagtctagcacgcttcttacattattgtaaaaagttatagacagggcgtatagccaaaactgtggttgaatgtgaa |
12455387 |
T |
|
| Q |
201 |
ttggtctgctgataaccttcatcgatcatagtggagtctgcaattttattgtgatatgtaaagtctctcatatacagtaaactaatatgtgaatggtaca |
300 |
Q |
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| T |
12455388 |
ttggtctgctgataaccttcattgatcatagtggagtctgcaattttattgtgatatgtaaagtctctcatatacagtaaactaatatgtgaatggtaca |
12455487 |
T |
|
| Q |
301 |
atttatagatgt |
312 |
Q |
| |
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|||||||||||| |
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| T |
12455488 |
atttatagatgt |
12455499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 310 - 596
Target Start/End: Original strand, 12455764 - 12456051
Alignment:
| Q |
310 |
tgtattcgtacacactccaacactctgagtcaactagaatttgaggtgagtgagagatatgatgaatagtgggcaccttgcttccggtggaaggaaagtc |
409 |
Q |
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| T |
12455764 |
tgtattcgtacacactccaacactctgagtcaacaagaatttgaggtgagtgagagatatgatgaatagtgggcaccttgcttccggtggaaggaaagtc |
12455863 |
T |
|
| Q |
410 |
ctaatacaactgaactgccgaggtaaaatggtgggaaagtctgttgagaaagttataagtaggaatgtatatcgccgtgatatgcgaatcaatgtttagt |
509 |
Q |
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| T |
12455864 |
ctaatacaattgaactgcccaggtaaaatggtgggaaagtctgttgagaaagttataagtcggaatgtatatcgccgtgatatgcgaatcaatgtttagt |
12455963 |
T |
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| Q |
510 |
tgagatcatgctgtcgttgatcttcagtgacgttttgctca-ggggttgggtctgtagtgcagaaatctagttcggatgggtcatggg |
596 |
Q |
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| T |
12455964 |
tgagatcatgcagtcgttgatcttcagtgacgttttgctcatggagttgggtctgtagtgcagaaatctagttcggatgggtcatggg |
12456051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 5654557 - 5654501
Alignment:
| Q |
73 |
gatacatattcgacatcggaaaactcctaatccgaggagtatttgtgcttcatagtc |
129 |
Q |
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| T |
5654557 |
gatacgtatccgacaccggaatacgcctaatccgaagagtatttgtgcttcatagtc |
5654501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 30621782 - 30621753
Alignment:
| Q |
98 |
cctaatccgaggagtatttgtgcttcatag |
127 |
Q |
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| T |
30621782 |
cctaatccgaggagtatttgtgcttcatag |
30621753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 21211381 - 21211415
Alignment:
| Q |
95 |
actcctaatccgaggagtatttgtgcttcatagtc |
129 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
21211381 |
actcctaatccgaggagtgtttgtgcttcatagtc |
21211415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 47132184 - 47132212
Alignment:
| Q |
98 |
cctaatccgaggagtatttgtgcttcata |
126 |
Q |
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| T |
47132184 |
cctaatccgaggagtatttgtgcttcata |
47132212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 11596427 - 11596398
Alignment:
| Q |
98 |
cctaatccgaggagtatttgtgcttcatag |
127 |
Q |
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| T |
11596427 |
cctaatccgaggagtatttgtgcttcatag |
11596398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 38134383 - 38134335
Alignment:
| Q |
79 |
tattcgacatcggaaaactcctaatccgaggagtatttgtgcttcatag |
127 |
Q |
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||||||||||||| | || ||||||||||||||| | |||||||||||| |
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| T |
38134383 |
tattcgacatcgggacacgcctaatccgaggagtgtatgtgcttcatag |
38134335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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