View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_low_31 (Length: 229)
Name: NF12797_low_31
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 17207149 - 17206941
Alignment:
| Q |
13 |
agtacccattcatgcaaagagttgttgaaaaacttcatatgcacataaattatgaaaagaaagtattgtagaacataatggctaattcatgttctaactt |
112 |
Q |
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| T |
17207149 |
agtacccattcatgccaagagttgttgaaaaacttcatatgcacataaattatgaaaagaaagtattgtaaaacataatggttaattcatgttctaactt |
17207050 |
T |
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| Q |
113 |
ttatgctaactttgagtttacatttcagacataatacaaaacctcaagtcagaaaatgttactaatcaaattaaagatcacaattcaagatggtcagggt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17207049 |
ttatgctaactttgagtttacatttcagacataatacaaaaccccaagtcagaaaatgttactaatcaaattaaagatcacaattcaagatggtcagggt |
17206950 |
T |
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| Q |
213 |
tcacaaatt |
221 |
Q |
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||||||||| |
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| T |
17206949 |
tcacaaatt |
17206941 |
T |
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