View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_low_34 (Length: 222)
Name: NF12797_low_34
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 32764409 - 32764611
Alignment:
| Q |
18 |
aaatattgtgtatgatacctgaatatatagttaaggacaaatatttccaaagtcatgcgccctaattctgtgagacacctttcatcatgctcaatacaat |
117 |
Q |
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| T |
32764409 |
aaatattgtgtatgatacctgaatatatagttaaggacaaatatttccaaagtcatgcgccctaattctgtgagacacctttcatcatgctcaatacaat |
32764508 |
T |
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| Q |
118 |
ctttgtcgaaatcctccccagagtgtccattctgcaagaacacgggaaacaggtccttagcaatcaaaaggatttcagagcccttttggcaattccttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32764509 |
ctttgtcgaaatcctccccagagtgtccattctgcaagaacatgggaaacaggtccttagcaatcaaaaggatttcagagcccttttggcacttccttgt |
32764608 |
T |
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| Q |
218 |
tac |
220 |
Q |
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||| |
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| T |
32764609 |
tac |
32764611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 32752939 - 32753108
Alignment:
| Q |
22 |
attgtgtatgatacctgaatatatagttaaggacaaatatttccaaagtcatgcgccctaattctgtgagacacctttcatcatgctcaatacaatcttt |
121 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| ||||||||| || ||||| ||||||| |
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| T |
32752939 |
attgtgtatgctacctgaatatatgagcaaggacaaatatttccaaagtcctacgccctaattctgtgagacgcctttcatcgcgcacaatagaatcttt |
32753038 |
T |
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| Q |
122 |
gtcgaaatcctccccagagtgtccattctgcaagaacacgggaaac-aggtccttagcaatcaaaaggatt |
191 |
Q |
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| T |
32753039 |
attgaaatcctcaccagagtttacatcctacaa-aacacaagaaacggggtacttagcaatcaaaaggatt |
32753108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 16777096 - 16776994
Alignment:
| Q |
50 |
aaggacaaatatttccaaagtcatgcgccctaattctgtgagacacctttcatcatgctcaatacaatctttgtcgaaatcctccccagagtgtccattc |
149 |
Q |
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||||||||||||||||| |||| | || || ||||||||||||| |||||||||| |||| ||| | ||||| | ||| || |||||||||| ||||| | |
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| T |
16777096 |
aaggacaaatatttccagagtcctacgacccaattctgtgagacgcctttcatcacgctctatagattctttattgaagtcatccccagagtttccatcc |
16776997 |
T |
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| Q |
150 |
tgc |
152 |
Q |
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||| |
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| T |
16776996 |
tgc |
16776994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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