View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12797_low_6 (Length: 445)
Name: NF12797_low_6
Description: NF12797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12797_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 14179531 - 14179204
Alignment:
| Q |
14 |
caaaaacaagtataacattttggttgaagaaatactctaaacaccaaagttaaataacaacacaggcaattacaaaatgtttccacaaactctcaatttt |
113 |
Q |
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| T |
14179531 |
caaaaacaagtataacattttggttgaagaaattctctaaacaccaaagttaaataacaacacaagcaattacaaa-tgtttccacaacctctcaatttt |
14179433 |
T |
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| Q |
114 |
gaccttccattgttacttgtgatgtaaatgaaaagtaagtaggacaaataattgatgcagcaagagacagctgtaatttgattctataatttgtagccct |
213 |
Q |
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| T |
14179432 |
gacctt-----gttacttgtaatgtaaat-----------------atcaattgaagcagcaagagacagctgtaatttgattttataagatgtagccct |
14179355 |
T |
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| Q |
214 |
atgaaaattattataggaaagtaaaaattacattcatattcattatctatccacataaatatgttgttgaaagtgaaatgtacataatctctggcacatg |
313 |
Q |
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| T |
14179354 |
ataaaaatctttatagcaaagctgaaattgtattcatattcattatttatctacataaatatatcgttgaaagtgaaatg--cataatctccagcacatg |
14179257 |
T |
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| Q |
314 |
ctgttgaaaaaacgaattataacatgaaatcatcatatacatatttgtcatat |
366 |
Q |
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| T |
14179256 |
ctgtctgaaaaacgaattataacatgaaatcatcatatacatatttgtaatat |
14179204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 14179141 - 14179087
Alignment:
| Q |
377 |
agttggtcaacct-agtttgatcgaatgaaagagaccaataactttactttatgt |
430 |
Q |
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| T |
14179141 |
agttggtcaaccttagtttgatcgaatgaaagagaccaataacttcacttcatgt |
14179087 |
T |
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